CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g12203

Gene name scpl17 (serine carboxypeptidase-like 17)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.14 6.8 At3g12203 820399 scpl17 (serine carboxypeptidase-like 17) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.43 55.3 At1g25410 839127 ATIPT6 AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds S.X. H.G.
0.40 50.8 At1g73290 843663 scpl5 (serine carboxypeptidase-like 5) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.32 35.7 At2g25940 817135 ALPHA-VPE (alpha-vacuolar processing enzyme) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. S.X. H.G.
0.32 35.7 At3g04200 819575 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1187.5 100.0 GSM10453 WT Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
417.2 100.0 GSM131694 ATGE_79_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
374.8 100.0 GSM131696 ATGE_79_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
346.6 100.0 GSM131695 ATGE_79_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
342.3 100.0 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
295.7 100.0 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
283.0 100.0 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
267.4 100.0 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
226.3 100.0 E-ATMX-1-raw-cel-1112746209
201.1 100.0 E-ATMX-1-raw-cel-1112746267
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.67 1e-159 563 At3g12240 820404 SCPL15 (serine carboxypeptidase-like 15) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.65 2e-152 539 At3g12220 820402 scpl16 (serine carboxypeptidase-like 16) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.65 4e-150 531 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.56 4e-76 286 At3g10450 820209 SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.43 3e-49 196 At2g22970 816828 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-8 61 Glycine max GmaAffx.60252.1.S1_at BI321448 - - 6e-9 At3g12203 scpl17 (serine carboxypeptidase-like 17) C.G. S.X.
0.04 2e-2 40 Hordeum vulgare Contig17621_at Contig17621 - - 1e-1 At1g73310 scpl4 (serine carboxypeptidase-like 4) C.G. S.X.
0.04 1e+0 36 Oryza sativa OsAffx.31157.1.S1_at - - - 0 C.G. S.X.
0.09 6e-11 69 Populus trichocarpa PtpAffx.221260.1.S1_at pmrna38018 - - 5e-13 At3g10450 SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7) C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.10329.13.S1_a_at BJ217006 - - 7e-24 At5g59690 histone H4 C.G. S.X.
0.12 9e-13 73 Vitis vinifera 1607463_at CB343440 hypothetical protein LOC100255717 - 1e-12 At3g12203 scpl17 (serine carboxypeptidase-like 17) C.G. S.X.
0.02 3e-4 46 Zea mays Zm.3150.1.S1_at BM080786 hypothetical protein LOC100216996 - 1e-3 At3g12203 scpl17 (serine carboxypeptidase-like 17) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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