CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g11980

Gene name MS2 (MALE STERILITY 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g11980 820372 MS2 (MALE STERILITY 2) Similar to fatty acid reductases. S.X. H.G.
1.00 100.0 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO S.X. H.G.
0.97 97.6 At1g02050 839280 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOF S.X. H.G.
0.97 97.6 At1g69500 843283 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAV S.X. H.G.
0.94 96.7 At3g42960 823352 ATA1 (ARABIDOPSIS TAPETUM 1) Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. S.X. H.G.
0.94 96.7 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.94 96.7 At4g34850 829637 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOF S.X. H.G.
0.91 95.6 At1g62940 842596 ACOS5 (ACYL-COA SYNTHETASE 5) encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile. S.X. H.G.
0.91 95.6 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.91 95.6 At5g07230 830614 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
309.5 100.0 E-MEXP-1592-raw-cel-1617526984
231.3 100.0 E-MEXP-1592-raw-cel-1617526920
193.2 100.0 E-MEXP-1592-raw-cel-1617526848
190.5 100.0 E-MEXP-1592-raw-cel-1617526976
165.2 100.0 GSM253196 RGA-GR-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
163.9 99.9 E-MEXP-849-raw-cel-1181980942
158.3 99.9 E-MEXP-1592-raw-cel-1617526816
142.8 99.9 GSM253198 RGA-GR-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
138.2 99.9 E-MEXP-1592-raw-cel-1617526888
130.3 99.9 E-MEXP-1592-raw-cel-1617526824
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 1e-6 56 At4g33790 829521 CER4 (ECERIFERUM 4) Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces. C.G. S.X.
0.03 6e-5 50 At3g56700 824837 FAR6 (FATTY ACID REDUCTASE 6) F:fatty acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;P:microsporogenesis, metabolic process;C:chloroplast;MBFOP C.G. S.X.
0.03 1e-3 46 At5g22500 832311 FAR1 (FATTY ACID REDUCTASE 1) F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOP C.G. S.X.
0.03 1e-3 46 At3g44560 823581 FAR8 (FATTY ACID REDUCTASE 8) F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFP C.G. S.X.
0.02 1e-2 42 At5g22420 832303 FAR7 (FATTY ACID REDUCTASE 7) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MPBOF C.G. S.X.
0.02 1e-2 42 At2g25565 817095 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 6e-2 40 At3g44550 823580 FAR5 (FATTY ACID REDUCTASE 5) F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBFOPA C.G. S.X.
0.02 6e-2 40 At1g54650 841907 methyltransferase F:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MFOPAB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 42 Glycine max GmaAffx.58795.1.S1_at BG238021 - - 6e-9 At4g33790 CER4 (ECERIFERUM 4) C.G. S.X.
0.02 4e-1 36 Hordeum vulgare HV_CEa0018D10f_s_at HV_CEa0018D10f - - 2e+0 At5g63905 unknown protein C.G. S.X.
0.11 1e-13 79 Oryza sativa Os03g0167600 AK121254.1 - Male sterility protein 2 9e-14 At3g11980 MS2 (MALE STERILITY 2) C.G. S.X.
0.28 1e-31 139 Populus trichocarpa PtpAffx.213356.1.S1_at pmrna26135 hypothetical protein - 8e-32 At3g11980 MS2 (MALE STERILITY 2) C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.58023.1.S1_at CA623032 - - 6e-2 At3g44540 FAR4 (FATTY ACID REDUCTASE 4) C.G. S.X.
0.06 8e-8 57 Vitis vinifera 1612038_at CB835642 - - 1e-7 At3g11980 MS2 (MALE STERILITY 2) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6699.1.A1_at AI374583 - - 2e-2 At2g17770 ATBZIP27 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010584 The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00040 Fatty acid elongation and wax biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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