Gene omics information

Query gene ID At3g11980
Gene name MS2 (MALE STERILITY 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g11980820372MS2 (MALE STERILITY 2)Similar to fatty acid reductases.S.X.H.G.
1.00100.0At4g14080827044MEE48 (maternal effect embryo arrest 48)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;POS.X.H.G.
0.9797.6At1g02050839280chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOFS.X.H.G.
0.9797.6At1g69500843283electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAVS.X.H.G.
0.9496.7At3g42960823352ATA1 (ARABIDOPSIS TAPETUM 1)Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.S.X.H.G.
0.9496.7At4g20420827790tapetum-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9496.7At4g34850829637chalcone and stilbene synthase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:cellular_component unknown;PBOFS.X.H.G.
0.9195.6At1g62940842596ACOS5 (ACYL-COA SYNTHETASE 5)encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.S.X.H.G.
0.9195.6At3g52130824377protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.9195.6At5g07230830614protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
309.5100.0E-MEXP-1592-raw-cel-1617526984
231.3100.0E-MEXP-1592-raw-cel-1617526920
193.2100.0E-MEXP-1592-raw-cel-1617526848
190.5100.0E-MEXP-1592-raw-cel-1617526976
165.2100.0GSM253196RGA-GR-DEX-REP2GSE10019Identification of RGA downstream genes by using steroid-inducible system
163.999.9E-MEXP-849-raw-cel-1181980942
158.399.9E-MEXP-1592-raw-cel-1617526816
142.899.9GSM253198RGA-GR-DEX-REP3GSE10019Identification of RGA downstream genes by using steroid-inducible system
138.299.9E-MEXP-1592-raw-cel-1617526888
130.399.9E-MEXP-1592-raw-cel-1617526824
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.051e-656At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.C.G.S.X.
0.036e-550At3g56700824837FAR6 (FATTY ACID REDUCTASE 6)F:fatty acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;P:microsporogenesis, metabolic process;C:chloroplast;MBFOPC.G.S.X.
0.031e-346At5g22500832311FAR1 (FATTY ACID REDUCTASE 1)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:chloroplast;MBFOPC.G.S.X.
0.031e-346At3g44560823581FAR8 (FATTY ACID REDUCTASE 8)F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFPC.G.S.X.
0.021e-242At5g22420832303FAR7 (FATTY ACID REDUCTASE 7)F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MPBOFC.G.S.X.
0.021e-242At2g25565817095-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.026e-240At3g44550823580FAR5 (FATTY ACID REDUCTASE 5)F:oxidoreductase activity, acting on the CH-CH group of donors, binding, catalytic activity;P:microsporogenesis, metabolic process;C:cellular_component unknown;MBFOPAC.G.S.X.
0.026e-240At1g54650841907methyltransferaseF:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;MFOPABC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-242Glycine maxGmaAffx.58795.1.S1_atBG238021--6e-9At4g33790CER4 (ECERIFERUM 4)C.G.S.X.
0.024e-136Hordeum vulgareHV_CEa0018D10f_s_atHV_CEa0018D10f--2e+0At5g63905unknown proteinC.G.S.X.
0.111e-1379Oryza sativaOs03g0167600AK121254.1-Male sterility protein 29e-14At3g11980MS2 (MALE STERILITY 2)C.G.S.X.
0.281e-31139Populus trichocarpaPtpAffx.213356.1.S1_atpmrna26135hypothetical protein-8e-32At3g11980MS2 (MALE STERILITY 2)C.G.S.X.
0.022e-138Triticum aestivumTaAffx.58023.1.S1_atCA623032--6e-2At3g44540FAR4 (FATTY ACID REDUCTASE 4)C.G.S.X.
0.068e-857Vitis vinifera1612038_atCB835642--1e-7At3g11980MS2 (MALE STERILITY 2)C.G.S.X.
0.012e+034Zea maysZm.6699.1.A1_atAI374583--2e-2At2g17770ATBZIP27C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010584The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00040Link to KaPPA-View 4Fatty acid elongation and wax biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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