Gene omics information

Query gene ID At3g11870
Gene name protein kinase-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g11870820360protein kinase-relatedF:endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MOPFBVAS.X.H.G.
1.00100.0At1g31290840017PAZ domain-containing protein / piwi domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAS.X.H.G.
0.9797.6At4g29650829086cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseF:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPOS.X.H.G.
0.9296.0At1g73000843631-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.9195.6At3g21860821740ASK10 (ARABIDOPSIS SKP1-LIKE 10)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFVS.X.H.G.
0.9095.1At1g20680838656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POBMS.X.H.G.
0.9095.1At4g29640829085cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPOS.X.H.G.
0.8793.5At4g29570829078cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPOS.X.H.G.
0.8693.1At1g51000841522unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At1g61090842401unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1638.4100.0GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
1109.4100.0GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
397.9100.0GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
150.999.9GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
124.299.9GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
121.099.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.199.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
107.299.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
105.799.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
100.599.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.124e-963At2g17520816258IRE1AEncodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants.C.G.S.X.
0.022e-138At5g12020831075HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMC.G.S.X.
0.013e+034At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.C.G.S.X.
0.013e+034At5g65230836648AtMYB53 (myb domain protein 53)Member of the R2R3 factor gene family.C.G.S.X.
0.013e+034At5g46740834717UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21)Encodes a ubiquitin-specific protease.C.G.S.X.
0.023e+034At5g27210832779-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.013e+034At5g19360832056CPK34member of Calcium Dependent Protein KinaseC.G.S.X.
0.013e+034At4g34310829581unknown proteinF:unknown;P:unknown;C:unknown;FMBOPC.G.S.X.
0.013e+034At4g00350827306MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxPsAffx.CL444Contig1_atPsAffx.CL444Contig1--4e+0At4g16510YbaK/prolyl-tRNA synthetase-relatedC.G.S.X.
0.034e-136Hordeum vulgareHA27E10r_x_atHA27E10r--3e-5At2g3939060S ribosomal protein L35 (RPL35B)C.G.S.X.
0.022e+036Oryza sativaOs07g0534000AK063551.1-Thylakoid lumenal 19.6 kDa protein, chloroplastprecursor2e-13At5g52970thylakoid lumen 15.0 kDa proteinC.G.S.X.
0.027e-240Populus trichocarpaPtp.454.1.S1_atCK089190hypothetical protein-1e+0At4g01230reticulon family protein (RTNLB7)C.G.S.X.
0.029e-136Triticum aestivumTaAffx.107057.1.S1_atCA706883--9e-1At1g65640DegP4 (DegP protease 4)C.G.S.X.
0.021e+034Vitis vinifera1618721_atCF514419--7e-10At1g19397unknown proteinC.G.S.X.
0.021e+034Zea maysZm.6907.1.A1_atAI065607--1e+1At5g47630mtACP3 (mitochondrial acyl carrier protein 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006397Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
LGO:0006468The process of introducing a phosphate group on to a protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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