Gene omics information

Query gene ID At3g11840
Gene name PUB24 (PLANT U-BOX 24)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6478.9At3g11840820357PUB24 (PLANT U-BOX 24)Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity.S.X.H.G.
0.6781.6At2g05940815147protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.5974.7At5g47910834842RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D)NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.S.X.H.G.
0.5673.0At1g07135837224glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAS.X.H.G.
0.5469.5At1g29690839846CAD1 (constitutively activated cell death 1)Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.S.X.H.G.
0.5368.6At3g16720820924ATL2RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.S.X.H.G.
0.5368.6At3g59080825077aspartyl protease family proteinF:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOS.X.H.G.
0.5267.4At5g35735833550auxin-responsive family proteinF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBS.X.H.G.
0.5166.3At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.5166.3At3g53810824548lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
153.699.9GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
116.499.9GSM131318AtGen_6-3322_Saltstress-Roots-3.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
95.099.9GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
91.599.9GSM131317AtGen_6-3321_Saltstress-Roots-3.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
48.199.8GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
44.299.8GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutants
42.699.8GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.037e-446At1g49780841401PUB26 (PLANT U-BOX 26)F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFC.G.S.X.
0.011e-242At5g09840830844unknown proteinF:unknown;P:unknown;C:mitochondrion;PMFOBC.G.S.X.
0.021e-242At3g52450824410PUB22 (PLANT U-BOX 22)Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.C.G.S.X.
0.034e-240At2g35930818166PUB23 (PLANT U-BOX 23)Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.C.G.S.X.
0.027e-136At5g53045835384-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.027e-136At4g24110828511unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.017e-136At4g38540830011monooxygenase, putative (MO2)F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAMC.G.S.X.
0.017e-136At4g01400827943-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.017e-136At3g07220819910transcriptional activator, putativeF:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;FMPOC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGma.3604.4.S1_s_atBI317410--5e-8At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeC.G.S.X.
0.023e-136Hordeum vulgareContig3042_atContig3042--2e-12At5g25370PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)C.G.S.X.
0.026e+034Oryza sativaOsAffx.18604.2.S1_at---0C.G.S.X.
0.061e+036Populus trichocarpaPtpAffx.213399.1.S1_atpmrna26213hypothetical protein-6e-1At3g11840PUB24 (PLANT U-BOX 24)C.G.S.X.
0.021e-242Triticum aestivumTaAffx.4293.2.S1_atCA744090--9e-1At5g40010AATP1 (AAA-ATPase 1)C.G.S.X.
0.028e-134Vitis vinifera1613695_atCA815439hypothetical LOC100241660-1e-3At1g11610CYP71A18C.G.S.X.
0.025e+032Zea maysZm.3212.1.A1_atAY111219.1golgi SNARE 12 protein-9e-1At4g39460SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0051865The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink.
XGO:0002679A phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
XGO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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