CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g11840

Gene name PUB24 (PLANT U-BOX 24)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.64 78.9 At3g11840 820357 PUB24 (PLANT U-BOX 24) Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. S.X. H.G.
0.67 81.6 At2g05940 815147 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.59 74.7 At5g47910 834842 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. S.X. H.G.
0.56 73.0 At1g07135 837224 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVA S.X. H.G.
0.54 69.5 At1g29690 839846 CAD1 (constitutively activated cell death 1) Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. S.X. H.G.
0.53 68.6 At3g16720 820924 ATL2 RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. S.X. H.G.
0.53 68.6 At3g59080 825077 aspartyl protease family protein F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO S.X. H.G.
0.52 67.4 At5g35735 833550 auxin-responsive family protein F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB S.X. H.G.
0.51 66.3 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.51 66.3 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
153.6 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
116.4 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
95.0 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
91.5 99.9 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
50.3 99.8 E-MEXP-807-raw-cel-1173272948
48.1 99.8 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
47.1 99.8 E-NASC-76-raw-cel-1359879132
46.2 99.8 E-MEXP-546-raw-cel-863289424
44.2 99.8 GSM39196 RRE1_Chitin2 GSE2169 rre1 and rre2 mutants
42.6 99.8 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 7e-4 46 At1g49780 841401 PUB26 (PLANT U-BOX 26) F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBF C.G. S.X.
0.01 1e-2 42 At5g09840 830844 unknown protein F:unknown;P:unknown;C:mitochondrion;PMFOB C.G. S.X.
0.02 1e-2 42 At3g52450 824410 PUB22 (PLANT U-BOX 22) Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. C.G. S.X.
0.03 4e-2 40 At2g35930 818166 PUB23 (PLANT U-BOX 23) Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. C.G. S.X.
0.02 7e-1 36 At5g53045 835384 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.02 7e-1 36 At4g24110 828511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 7e-1 36 At4g38540 830011 monooxygenase, putative (MO2) F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAM C.G. S.X.
0.01 7e-1 36 At4g01400 827943 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.01 7e-1 36 At3g07220 819910 transcriptional activator, putative F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;FMPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max Gma.3604.4.S1_s_at BI317410 - - 5e-8 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig3042_at Contig3042 - - 2e-12 At5g25370 PLDALPHA3 (PHOSPHLIPASE D ALPHA 3) C.G. S.X.
0.02 6e+0 34 Oryza sativa OsAffx.18604.2.S1_at - - - 0 C.G. S.X.
0.06 1e+0 36 Populus trichocarpa PtpAffx.213399.1.S1_at pmrna26213 hypothetical protein - 6e-1 At3g11840 PUB24 (PLANT U-BOX 24) C.G. S.X.
0.02 1e-2 42 Triticum aestivum TaAffx.4293.2.S1_at CA744090 - - 9e-1 At5g40010 AATP1 (AAA-ATPase 1) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1613695_at CA815439 hypothetical LOC100241660 - 1e-3 At1g11610 CYP71A18 C.G. S.X.
0.02 5e+0 32 Zea mays Zm.3212.1.A1_at AY111219.1 golgi SNARE 12 protein - 9e-1 At4g39460 SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0051865 The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink.
X GO:0002679 A phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
X GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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