Gene omics information

Query gene ID At3g11520
Gene name CYCB1
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g11520820325CYCB1Encodes a B-type mitotic cyclin.S.X.H.G.
0.6781.6At1g50490841471UBC20 (ubiquitin-conjugating enzyme 20)Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells.S.X.H.G.
0.4355.3At1g34355840337forkhead-associated domain-containing protein / FHA domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAVS.X.H.G.
0.2930.3At1g20590838648cyclin, putativeF:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:endomembrane system, nucleus;MPOFS.X.H.G.
0.2014.4At4g02150827472MOS6 (MODIFIER OF SNC1, 6)Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
97.399.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
96.299.9GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
81.599.9GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
67.699.9GSM133951Murray_2-7_T12-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
54.999.8GSM142906WW002_ATH1_A2-willa-ISOX-REP2GSE6181Assembly of the cell wall pectic matrix.
51.999.8GSM134204Murray_3-2_D3-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
50.799.8GSM142905WW002_ATH1_A1-willa-CON-REP3GSE6181Assembly of the cell wall pectic matrix.
48.499.8GSM142907WW002_ATH1_A2-willa-ISOX-REP3GSE6181Assembly of the cell wall pectic matrix.
41.599.8GSM10446WT 24-Hr Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
40.799.8GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.488e-62238At5g06150830502CYC1BATEncodes a cyclin whose expression is reduced in response to high salt.C.G.S.X.
0.141e-1791At1g34460840348CYCB1B1 type cyclinC.G.S.X.
0.172e-757At2g26760817217CYCB1F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVC.G.S.X.
0.061e-242At4g37490829904CYCB1Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.C.G.S.X.
0.016e-136At5g37350833709RIO1 family proteinF:protein serine/threonine kinase activity, catalytic activity, ATP binding;P:unknown;C:unknown;MOFBPAVC.G.S.X.
0.016e-136At2g12400815712unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMC.G.S.X.
0.016e-136At2g45900819198unknown proteinF:molecular_function unknown;P:response to gibberellin stimulus;C:cellular_component unknown;POMFBC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.112e-138Glycine maxGma.8436.1.S1_s_atBG551662mitotic cyclin /// mitotic cyclin-2e-1At3g11520CYCB1C.G.S.X.
0.023e-136Hordeum vulgareHU14C08u_atHU14C08u--7e-1At1g66100thionin, putativeC.G.S.X.
0.025e-344Oryza sativaOs01g0281200AK107209.1-Cyclin type B-like2e-4At2g26760CYCB1C.G.S.X.
0.142e-138Populus trichocarpaPtpAffx.18355.1.S1_atCV253470hypothetical protein-2e-1At3g11520CYCB1C.G.S.X.
0.026e-136Triticum aestivumTaAffx.110294.1.S1_atCA660748--4e+0At2g22430ATHB6C.G.S.X.
0.022e-136Vitis vinifera1610297_atCB969600hypothetical protein LOC100244003-4e+0At2g36916unknown proteinC.G.S.X.
0.024e+032Zea maysZm.12002.1.A1_atBM382557--1e+0At4g21110G10 family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0007049The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
CGO:0051726Any process that modulates the rate or extent of progression through the cell cycle.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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