CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g11410

Gene name PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g11410 820314 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA. S.X. H.G.
0.26 24.4 At1g73390 843674 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PFM S.X. H.G.
0.26 24.4 At4g26080 828714 ABI1 (ABA INSENSITIVE 1) Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure. S.X. H.G.
0.23 19.3 At4g13010 826914 oxidoreductase, zinc-binding dehydrogenase family protein F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast thylakoid membrane, chloroplast, plasma membrane, vacuole;BOFMPAV S.X. H.G.
0.22 17.5 At5g13760 831221 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMOFVBA S.X. H.G.
0.21 15.8 At1g01240 839274 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;PMBO S.X. H.G.
0.21 15.8 At5g07250 830616 ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3) F:molecular_function unknown;P:unknown;C:integral to membrane;BOMPFA S.X. H.G.
0.19 12.7 At1g19310 838513 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB S.X. H.G.
0.19 12.7 At3g53000 824466 AtPP2-A15 (Phloem protein 2-A15) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P S.X. H.G.
0.16 8.8 At1g49300 841353 RABG3E (RAB GTPASE HOMOLOG G3E) encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.8 99.7 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
33.2 99.7 GSM268249 dor-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
31.3 99.7 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
29.7 99.7 E-ATMX-35-raw-cel-1574334832
27.8 99.7 GSM38670 DSNP GSE2268 Arabidopsis polysome microarray
27.2 99.7 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
25.8 99.7 GSM152139 Col-0 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
25.6 99.7 GSM170897 Col-0 +ABA repl1 GSE7112 Abscisic acid effect on wild type and the abh1 mutant
25.6 99.7 GSM38671 DSPS GSE2268 Arabidopsis polysome microarray
25.5 99.7 E-ATMX-35-raw-cel-1574334800
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 2e-10 67 At1g07430 837255 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV C.G. S.X.
0.10 6e-7 56 At5g59220 836040 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV C.G. S.X.
0.14 6e-4 46 At2g29380 817487 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV C.G. S.X.
0.01 2e-3 44 At4g17880 827511 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOVB C.G. S.X.
0.02 1e-1 38 At4g01460 828089 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO C.G. S.X.
0.01 1e-1 38 At4g17080 827416 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF C.G. S.X.
0.02 1e-1 38 At3g17250 820986 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA C.G. S.X.
0.01 6e-1 36 At5g24940 832564 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOBFAV C.G. S.X.
0.01 6e-1 36 At5g45990 834639 crooked neck protein, putative / cell cycle protein, putative F:binding;P:RNA processing;C:intracellular;MFOPBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 6e-8 59 Glycine max GmaAffx.52826.3.S1_at BF596503 - - 2e-8 At3g11410 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) C.G. S.X.
0.02 5e-3 42 Hordeum vulgare Contig17540_at Contig17540 - - 5e-1 At5g10530 lectin protein kinase, putative C.G. S.X.
0.04 5e-3 44 Oryza sativa Os05g0457200 9633.m03549 - Protein phosphatase-2C 2e-7 At1g07430 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.30 9e-47 188 Populus trichocarpa Ptp.868.1.S1_s_at CK089985 hypothetical protein - 7e-47 At3g11410 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) C.G. S.X.
0.04 4e-5 50 Triticum aestivum TaAffx.96410.1.S1_at BQ801574 - - 6e-5 At3g11410 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) C.G. S.X.
0.21 2e-22 105 Vitis vinifera 1608189_s_at BQ800538 hypothetical protein LOC100247958 - 1e-21 At3g11410 PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.10292.1.A1_at BM737261 - - 6e-16 At2g40860 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
X GO:0009738 A series of molecular signals mediated by the detection of abscisic acid.
X GO:0009788 Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid.
X GO:0010119 Any process that modulates the frequency, rate or extent of stomatal movement.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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