CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g11050

Gene name ATFER2 (ferritin 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF S.X. H.G.
0.96 97.3 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. S.X. H.G.
0.92 96.0 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.92 96.0 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV S.X. H.G.
0.91 95.6 At3g50980 824262 XERO1 (DEHYDRIN XERO 1) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PM S.X. H.G.
0.88 94.0 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.88 94.0 At3g12960 820482 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.87 93.5 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.86 93.1 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA S.X. H.G.
0.85 92.4 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
380.9 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
345.5 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
344.3 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
316.5 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
309.1 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
305.3 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
289.5 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
289.2 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
285.3 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
269.8 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 2e-49 196 At3g61010 825272 glycosyl hydrolase family protein 85 F:in 6 functions;P:cellular iron ion homeostasis, iron ion transport;C:cytoplasm;MPO C.G. S.X.
0.21 2e-15 83 At2g40300 818622 ATFER4 (ferritin 4) Encodes FERRITIN 4, AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool. C.G. S.X.
0.13 7e-15 81 At3g56090 824775 ATFER3 (ferritin 3) Encodes FERRITIN 3, AtFER3. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool. C.G. S.X.
0.20 1e-7 57 At5g01600 831720 ATFER1 Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. C.G. S.X.
0.03 6e-3 42 At1g63190 842623 - F:molecular_function unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.01 4e-1 36 At1g04160 839246 XIB (MYOSIN XI B) Encodes a member of the type XI myosin protein family involved in root hair elongation. C.G. S.X.
0.03 2e+0 34 At4g34630 829615 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.01 2e+0 34 At4g19380 827679 alcohol oxidase-related F:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:unknown;C:cellular_component unknown;BOFMPA C.G. S.X.
0.02 2e+0 34 At3g51130 824277 unknown protein F:unknown;P:response to salt stress;C:cellular_component unknown;MFPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 2e-9 63 Glycine max Gma.1160.1.S1_at AB062755.1 ferritin - 1e-51 At2g40300 ATFER4 (ferritin 4) C.G. S.X.
0.13 3e-3 42 Hordeum vulgare Contig2716_s_at Contig2716 ferritin 1 - 1e-16 At5g01600 ATFER1 C.G. S.X.
0.03 2e-4 48 Oryza sativa Os12g0106000 AF519570.1 - Ferritin 1, chloroplast precursor (ZmFer1) 3e-6 At3g56090 ATFER3 (ferritin 3) C.G. S.X.
0.40 3e-55 216 Populus trichocarpa PtpAffx.12628.1.S1_at CV242138 hypothetical protein - 3e-55 At3g11050 ATFER2 (ferritin 2) C.G. S.X.
0.10 6e-3 42 Triticum aestivum Ta.681.1.S1_at CA701471 - - 3e-12 At5g01600 ATFER1 C.G. S.X.
0.27 2e-28 125 Vitis vinifera 1617711_s_at CB974291 hypothetical protein LOC100267235 - 3e-27 At3g56090 ATFER3 (ferritin 3) C.G. S.X.
0.09 2e-7 56 Zea mays Zm.2060.2.S1_a_at BQ577485 ferritin homolog2 - 5e-1 At3g56090 ATFER3 (ferritin 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
X GO:0009737 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
C GO:0006826 The directed movement of iron (Fe) ions into, out of, within or between cells.
C GO:0006879 Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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