Gene omics information

Query gene ID At3g10940
Gene name protein phosphatase-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g10940820265protein phosphatase-relatedF:phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:chloroplast;MOPFVBAS.X.H.G.
0.4355.3At1g70730843410phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putativeF:intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity;P:response to cadmium ion, carbohydrate metabolic process;C:cytosol, nucleus, plasma membrane;BOMFPAS.X.H.G.
0.4253.9At2g39930818580ISA1 (ISOAMYLASE 1)Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.S.X.H.G.
0.4050.8At5g17520831618RCP1 (ROOT CAP 1)Encodes a maltose transporter that is expressed in leaves and roots. Mutations at the MEX1 locus cause accumulation of both starch and maltose in leaves, with maltose levels at least 40 times higher than that of wild-type. This gene encodes a protein located in the chloroplast envelope.S.X.H.G.
0.3948.4At5g63060836426transporterF:transporter activity;P:transport;C:chloroplast;MPFOS.X.H.G.
0.3948.4At3g015108211275'-AMP-activated protein kinase beta-1 subunit-relatedF:protein binding, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation;C:chloroplast, chloroplast stroma;MPOFVBS.X.H.G.
0.3948.4At1g03310839531isoamylase, putative / starch debranching enzyme, putativeEncodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.S.X.H.G.
0.3846.7At4g29590829080methyltransferaseF:methyltransferase activity;P:metabolic process;C:chloroplast;BOPAFS.X.H.G.
0.3846.7At5g49970835061ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)encodes the bifunctional pyridoxine (pyridoxamine) 5-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group)S.X.H.G.
0.3745.0At1g73170843649ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidaseF:nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding;P:proteolysis;C:chloroplast;BOPMAFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
93.099.9GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.799.6GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
15.599.5GSM131324AtGen_6-3512_Saltstress-Shoots-12.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
12.599.3GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.299.3GSM252688Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep2GSE9996Organ regeneration in plants is independent of stem cell niche activity
12.299.3GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
11.999.3GSM133776Lindsey_1-1_globular-apical_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.999.3GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
11.899.3GSM184892Arabidopsis, root cells, columella root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
11.499.3GSM131323AtGen_6-3511_Saltstress-Shoots-12.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-240At4g25520828657SLK1 (SEUSS-LIKE 1)F:transcription regulator activity;P:unknown;C:unknown;OMFPBVC.G.S.X.
0.021e-138At5g42970834312COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)encodes subunit 4 of COP9 signalosome complex. sequence is similar to a subunit of the 19S regulatory particle of the 26S proteasome. recessive mutation causes derepression of photomorphogenesis.C.G.S.X.
0.024e-136At3g20810821629transcription factor jumonji (jmjC) domain-containing proteinF:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPVC.G.S.X.
0.014e-136At3g09670820124PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBC.G.S.X.
0.022e+034At5g11710831043epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedEPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated with actin filaments and with the Golgi complex. Expressed in most tissues.C.G.S.X.
0.022e+034At3g26100822208regulator of chromosome condensation (RCC1) family proteinF:Ran GTPase binding;P:biological_process unknown;C:unknown;MOBPFAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-136Glycine maxGma.15470.2.A1_atBU545647--3e-7At3g10405unknown proteinC.G.S.X.
0.038e-134Hordeum vulgareContig324_atContig324--1e-74At3g1151040S ribosomal protein S14 (RPS14B)C.G.S.X.
0.063e-654Oryza sativaOs12g0112500AK072567.1-Dual specificity protein phosphatase familyprotein4e-6At3g10940protein phosphatase-relatedC.G.S.X.
0.467e-1685Populus trichocarpaPtpAffx.212188.1.S1_s_atpmrna23890hypothetical protein-4e-16At3g10940protein phosphatase-relatedC.G.S.X.
0.037e+032Triticum aestivumTaAffx.128541.30.S1_atCA696946--1e+0At1g74240mitochondrial substrate carrier family proteinC.G.S.X.
0.284e-1477Vitis vinifera1611715_atCF210907hypothetical protein LOC100251903-9e-14At3g10940protein phosphatase-relatedC.G.S.X.
0.151e-550Zea maysZm.5135.1.A1_atAI600980Dual-specificity protein-like phosphatase 3-2e-5At3g10940protein phosphatase-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006470The process of removing one or more phosphoric residues from a protein.
LGO:0016311The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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