Gene omics information

Query gene ID At3g10930
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6982.9At3g10930820264unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
0.8089.8At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFS.X.H.G.
0.7486.1At4g34410829591RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
0.7385.5At2g30040817555MAPKKK14member of MEKK subfamilyS.X.H.G.
0.6478.9At1g74930843832ORA47encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.S.X.H.G.
0.6478.9At5g59820836103RHL41 (RESPONSIVE TO HIGH LIGHT 41)Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway.S.X.H.G.
0.6075.7At3g61190825291BAP1 (BON ASSOCIATION PROTEIN 1)Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.S.X.H.G.
0.5974.7At2g050503767735catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknownS.X.H.G.
0.5773.8At1g80840844423WRKY40Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.S.X.H.G.
0.5773.8At4g17500827464ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
209.1100.0GSM218586Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
201.9100.0GSM184519Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
200.4100.0GSM218585Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
150.099.9GSM218587Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
146.299.9GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
118.499.9GSM184517Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
118.099.9GSM184518Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
96.499.9GSM184520Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
91.099.9GSM184502Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
89.799.9E-MEXP-807-raw-cel-1173273144
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.344e-1477At5g05300830412unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.031e-136At5g24310832498ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVC.G.S.X.
0.011e-136At5g06120830499Ran-binding protein, putativeF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOPC.G.S.X.
0.011e-136At3g23020821876pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.031e-136At1g30850839969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.026e-134At5g44070834430CAD1 (CADMIUM SENSITIVE 1)Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.C.G.S.X.
0.016e-134At5g20690832192ATP binding / kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.026e-134At2g30530817602unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OMFPBVC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.053e+032Glycine maxHgAffx.22528.1.S1_atBI749615--3e+0At3g10930unknown proteinC.G.S.X.
0.041e+032Hordeum vulgareContig6537_atContig6537--1e+0At3g61640AGP20C.G.S.X.
0.042e-240Oryza sativaOsAffx.9402.1.S1_x_at---0C.G.S.X.
0.053e+032Populus trichocarpaPtpAffx.218609.1.S1_atpmrna34286hypothetical protein-2e-4At1g80890unknown proteinC.G.S.X.
0.061e-136Triticum aestivumTa.16621.1.S1_atCA609807--3e-1At3g10930unknown proteinC.G.S.X.
0.043e+030Vitis vinifera1620354_atCF372581hypothetical protein LOC100261409-1e-15At5g2777060S ribosomal protein L22 (RPL22C)C.G.S.X.
0.044e+030Zea maysZmAffx.1413.1.S1_at40794996-88--1e-113Atmg00660-C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage