CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g10480

Gene name no apical meristem (NAM) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g10480 820212 no apical meristem (NAM) family protein F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;POMFB S.X. H.G.
0.47 61.2 At3g20630 821610 UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. S.X. H.G.
0.47 61.2 At5g13540 - - - S.X. H.G.
0.44 57.2 At1g10390 837579 nucleoporin family protein F:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVA S.X. H.G.
0.43 55.3 At1g43850 840981 SEU (seuss) Encodes a transcriptional co-regulator of AGAMOUS, that functions with LEUNIG to repress AG in the outer floral whorls. S.X. H.G.
0.41 52.4 At5g42620 834269 metalloendopeptidase/ zinc ion binding F:metalloendopeptidase activity, zinc ion binding;P:proteolysis, cell adhesion;C:endomembrane system, membrane;MOPFBVA S.X. H.G.
0.38 46.7 At1g10250 837564 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.38 46.7 At2g29190 817468 APUM2 (Arabidopsis Pumilio 2) F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;FOMPB S.X. H.G.
0.34 39.8 At2g38950 818480 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO S.X. H.G.
0.33 38.1 At3g63070 825482 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.0 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.0 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.6 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.3 99.8 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.9 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.6 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.0 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.9 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.0 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.7 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 0 825 At3g10490 820213 anac052 (Arabidopsis NAC domain containing protein 52) F:transcription factor activity;P:multicellular organismal development, pollen development;C:nucleolus;P C.G. S.X.
0.15 1e-20 101 At5g04400 830319 anac077 (Arabidopsis NAC domain containing protein 77) F:DNA binding;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POBM C.G. S.X.
0.04 8e-13 75 At5g09330 830792 anac082 (Arabidopsis NAC domain containing protein 82) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PMOBF C.G. S.X.
0.05 3e-9 63 At5g64060 836527 anac103 (Arabidopsis NAC domain containing protein 103) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.04 7e-7 56 At1g34190 840318 anac017 (Arabidopsis NAC domain containing protein 17) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POB C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-3 46 Glycine max GmaAffx.90496.1.S1_s_at CF806221 NAC domain protein NAC3 - 5e-15 At4g27410 RD26 (RESPONSIVE TO DESICCATION 26) C.G. S.X.
0.03 8e-2 38 Hordeum vulgare Contig16020_at Contig16020 - - 2e-1 At5g47390 myb family transcription factor C.G. S.X.
0.05 1e-6 56 Oryza sativa OsAffx.30185.1.S1_s_at - - - 0 C.G. S.X.
0.13 6e-5 50 Populus trichocarpa PtpAffx.158423.1.S1_at CV239635 NAC domain protein, IPR003441 - 2e-7 At3g10490 anac052 (Arabidopsis NAC domain containing protein 52) C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.57765.1.S1_at CA625260 - - 1e-2 At1g01720 ATAF1 C.G. S.X.
0.05 8e-4 44 Vitis vinifera 1609555_at CD719835 hypothetical protein LOC100261123 - 2e-30 At5g08790 ATAF2 C.G. S.X.
0.02 5e-3 42 Zea mays Zm.15796.1.S1_at BE640285 - - 7e-5 At3g10490 anac052 (Arabidopsis NAC domain containing protein 52) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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