CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g10450

Gene name SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g10450 820209 SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO S.X. H.G.
0.20 14.4 At1g33490 840243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
0.17 10.2 At2g04890 815036 SCL21 (SCARECROW-LIKE 21) Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family. S.X. H.G.
0.03 0.6 At5g62200 836341 embryo-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;P S.X. H.G.
0.02 0.4 At2g01490 814677 phytanoyl-CoA dioxygenase (PhyH) family protein F:phytanoyl-CoA dioxygenase activity;P:N-terminal protein myristoylation;C:plasma membrane;OMBFP S.X. H.G.
0.01 0.2 At5g14680 831320 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAMOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.4 99.9 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
97.0 99.9 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
76.7 99.9 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
74.2 99.9 GSM133722 Deeken_A-2-Deeke-Inf_SLD_REP2 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
70.0 99.9 GSM270866 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
55.8 99.8 GSM133819 Yang_1-4_old-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
53.1 99.8 E-MEXP-1797-raw-cel-1669767967
45.8 99.8 GSM133728 McCormac_1-6_mutant-NFtreated_Rep2_ATH1 GSE5726 Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts
45.3 99.8 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
42.7 99.8 E-MEXP-1797-raw-cel-1669767940
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 0 660 At1g73300 843664 scpl2 (serine carboxypeptidase-like 2) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.75 6e-180 630 At1g73290 843663 scpl5 (serine carboxypeptidase-like 5) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.67 1e-177 623 At1g73270 843661 scpl6 (serine carboxypeptidase-like 6) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.73 4e-172 605 At1g73310 843665 scpl4 (serine carboxypeptidase-like 4) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.68 4e-172 605 At1g73280 843662 scpl3 (serine carboxypeptidase-like 3) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.74 2e-146 519 At5g36180 833615 scpl1 (serine carboxypeptidase-like 1) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.58 7e-121 434 At2g22920 816823 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 6e-5 50 Glycine max GmaAffx.60252.1.S1_at BI321448 - - 6e-9 At3g12203 scpl17 (serine carboxypeptidase-like 17) C.G. S.X.
0.02 8e-2 38 Hordeum vulgare Contig10807_at Contig10807 - - 1e-1 At4g22610 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 1e+0 36 Oryza sativa Os11g0643400 9639.m03906 - - 4e-2 At1g73290 scpl5 (serine carboxypeptidase-like 5) C.G. S.X.
0.15 3e-10 67 Populus trichocarpa PtpAffx.216395.1.S1_x_at pmrna31153 hypothetical protein - 7e-16 At1g73300 scpl2 (serine carboxypeptidase-like 2) C.G. S.X.
0.02 7e-1 36 Triticum aestivum Ta.6936.3.S1_at BE445451 - - 1e-9 At1g61700 DNA-directed RNA polymerase II, putative (RPB10) C.G. S.X.
0.03 5e-5 48 Vitis vinifera 1618751_at CF513682 hypothetical protein LOC100255006 - 1e-4 At1g28110 SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR) C.G. S.X.
0.02 2e+1 30 Zea mays ZmAffx.37.1.S1_at AI657467 - - 5e+0 At3g21338 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00355 Acyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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