CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g10120

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At3g10120 820175 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At1g19630 838550 CYP722A1 member of CYP722A S.X. H.G.
0.67 81.6 At3g29670 822645 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.60 75.7 At4g25434 828648 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) F:ADP-ribose diphosphatase activity, NAD or NADH binding, catalytic activity;P:metabolic process;C:unknown;BOMPAF S.X. H.G.
0.60 75.7 At5g64530 836574 XND1 F:transcription factor activity;P:multicellular organismal development, shoot development, xylem histogenesis, programmed cell death;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
284.4 100.0 GSM142625 MC002_ATH1_A1.3-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
269.4 100.0 GSM142624 MC002_ATH1_A1.2-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
257.5 100.0 GSM142623 MC002_ATH1_A1.1-dubos-wtx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
251.2 100.0 GSM142631 MC002_ATH1_A3.3-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
250.6 100.0 GSM142629 MC002_ATH1_A3.1-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
232.8 100.0 GSM142630 MC002_ATH1_A3.2-dubos-6kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
140.6 99.9 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
138.3 99.9 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
117.9 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
116.0 99.9 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.39 1e-27 123 At5g03890 831673 unknown protein F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P C.G. S.X.
0.03 1e-3 44 At4g00310 827417 EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) F:molecular_function unknown;P:embryonic development ending in seed dormancy, megagametogenesis;C:cellular_component unknown;PFMO C.G. S.X.
0.06 1e-3 44 At1g67670 843092 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.07 4e-3 42 At5g55650 835659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.06 4e-3 42 At2g30280 817578 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.03 4e-3 42 At2g26110 817151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
0.01 2e-2 40 At5g19310 832051 homeotic gene regulator, putative F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 2e-2 40 At3g48430 824002 REF6 (RELATIVE OF EARLY FLOWERING 6) Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-3 42 Glycine max GmaAffx.80543.1.S1_at AW759369 - - 6e-1 At5g03350 legume lectin family protein C.G. S.X.
0.05 3e-2 38 Hordeum vulgare HVSMEh0082A13r2_s_at HVSMEh0082A13r2 - - 3e+0 At1g63120 ATRBL2 (Arabidopsis thaliana Rhomboid-like 2) C.G. S.X.
0.05 3e-2 40 Oryza sativa Os09g0256501 9637.m00620 - - 7e-3 At2g22320 unknown protein C.G. S.X.
0.05 2e-2 40 Populus trichocarpa PtpAffx.138920.1.A1_at BP931990 hypothetical protein - 8e-1 At3g53235 unknown protein C.G. S.X.
0.05 3e-1 36 Triticum aestivum Ta.11515.3.S1_x_at CA696236 - - 3e+0 At3g26800 unknown protein C.G. S.X.
0.04 8e-2 36 Vitis vinifera 1621192_at CF516648 hypothetical protein LOC100248705 - 4e+0 At2g27920 SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.6246.2.A1_at AI677558 - - 9e-7 At2g22080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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