Gene omics information

Query gene ID At3g10040
Gene name transcription factor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAS.X.H.G.
1.00100.0At3g02550821112LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)F:unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9195.6At3g27220822341kelch repeat-containing proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFAS.X.H.G.
0.9195.6At4g10270826619wound-responsive family proteinF:molecular_function unknown;P:response to wounding;C:unknown;PS.X.H.G.
0.9195.6At5g15120831364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.9195.6At5g39890833986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.8089.8At4g33560829495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
226.7100.0GSM290756root - 01% oxygen - 30min - DGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
213.2100.0GSM290755root - 01% oxygen - 2h - FGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
195.0100.0GSM131237AtGen_6-0221_Control-Roots-1.0h_Rep1GSE5620AtGenExpress: Stress Treatments (Control plants)
154.999.9GSM290753root - 01% oxygen - 2h - EGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
136.899.9GSM290762root - 04% oxygen - 30min - DGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
121.999.9GSM290760root - 04% oxygen - 2h - DGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
92.699.9GSM206277Wild type, water treatment, biological rep1GSE8319A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
89.899.9GSM206278Wild type, water treatment, biological rep2GSE8319A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
79.899.9GSM2454772 hr Hypoxia Stress Total RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
70.999.9GSM2454822 hr Hypoxia Stress IP RNA Rep 2GSE9719Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.094e-859At1g21200838715transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POMBVAFC.G.S.X.
0.034e-550At5g38300833812unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.022e-448At5g28040832874transcription regulatorF:transcription regulator activity;P:unknown;C:unknown;PMBOFC.G.S.X.
0.032e-448At3g55730824739MYB109 (myb domain protein 109)putative transcription factor MYB109 (MYB109) mRNA,C.G.S.X.
0.037e-446At1g75550843891glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAC.G.S.X.
0.023e-344At4g17440827455unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
0.023e-344At1g67570843078unknown proteinF:unknown;P:unknown;C:nucleus;POC.G.S.X.
0.041e-242At5g10040830868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.098e-23109Glycine maxGma.8446.1.S1_atAF350328.1SHOOT2 protein-6e-23At3g10040transcription factorC.G.S.X.
0.033e-446Hordeum vulgareContig17523_atContig17523--7e-2At4g08230glycine-rich proteinC.G.S.X.
0.043e-757Oryza sativaOs01g0932700AK105157.1-Gamma thionin family protein7e+0At3g55770LIM domain-containing proteinC.G.S.X.
0.198e-23109Populus trichocarpaPtpAffx.219809.1.S1_s_atpmrna35920hypothetical protein-6e-23At3g10040transcription factorC.G.S.X.
0.032e-448Triticum aestivumTaAffx.52035.1.S1_atCA714343--1e-2At5g61412unknown proteinC.G.S.X.
0.033e-342Vitis vinifera1615010_atCF406012hypothetical protein LOC100260856-8e-3At4g15120VQ motif-containing proteinC.G.S.X.
0.037e-238Zea maysZmAffx.1176.1.A1_atAW927389--8e-1At3g18250unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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