CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g10040

Gene name transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA S.X. H.G.
1.00 100.0 At3g02550 821112 LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At3g27220 822341 kelch repeat-containing protein F:unknown;P:biological_process unknown;C:Golgi apparatus;MBOVPFA S.X. H.G.
0.91 95.6 At4g10270 826619 wound-responsive family protein F:molecular_function unknown;P:response to wounding;C:unknown;P S.X. H.G.
0.91 95.6 At5g15120 831364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.91 95.6 At5g39890 833986 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.80 89.8 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
226.7 100.0 GSM290756 root - 01% oxygen - 30min - D GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
213.2 100.0 GSM290755 root - 01% oxygen - 2h - F GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
195.0 100.0 GSM131237 AtGen_6-0221_Control-Roots-1.0h_Rep1 GSE5620 AtGenExpress: Stress Treatments (Control plants)
154.9 99.9 GSM290753 root - 01% oxygen - 2h - E GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
136.8 99.9 GSM290762 root - 04% oxygen - 30min - D GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
121.9 99.9 GSM290760 root - 04% oxygen - 2h - D GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
92.6 99.9 GSM206277 Wild type, water treatment, biological rep1 GSE8319 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
89.8 99.9 GSM206278 Wild type, water treatment, biological rep2 GSE8319 A LysM Receptor-like Kinase Mediates Chitin Perception and Fungal Resistance in Arabidopsis
79.8 99.9 GSM245477 2 hr Hypoxia Stress Total RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
70.9 99.9 GSM245482 2 hr Hypoxia Stress IP RNA Rep 2 GSE9719 Dynamics of mRNA abundance and translation in response to short and prolonged hypoxia and reoxygenation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 4e-8 59 At1g21200 838715 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POMBVAF C.G. S.X.
0.03 4e-5 50 At5g38300 833812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.02 2e-4 48 At5g28040 832874 transcription regulator F:transcription regulator activity;P:unknown;C:unknown;PMBOF C.G. S.X.
0.03 2e-4 48 At3g55730 824739 MYB109 (myb domain protein 109) putative transcription factor MYB109 (MYB109) mRNA, C.G. S.X.
0.03 7e-4 46 At1g75550 843891 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA C.G. S.X.
0.02 3e-3 44 At4g17440 827455 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.02 3e-3 44 At1g67570 843078 unknown protein F:unknown;P:unknown;C:nucleus;PO C.G. S.X.
0.04 1e-2 42 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-23 109 Glycine max Gma.8446.1.S1_at AF350328.1 SHOOT2 protein - 6e-23 At3g10040 transcription factor C.G. S.X.
0.03 3e-4 46 Hordeum vulgare Contig17523_at Contig17523 - - 7e-2 At4g08230 glycine-rich protein C.G. S.X.
0.04 3e-7 57 Oryza sativa Os01g0932700 AK105157.1 - Gamma thionin family protein 7e+0 At3g55770 LIM domain-containing protein C.G. S.X.
0.19 8e-23 109 Populus trichocarpa PtpAffx.219809.1.S1_s_at pmrna35920 hypothetical protein - 6e-23 At3g10040 transcription factor C.G. S.X.
0.03 2e-4 48 Triticum aestivum TaAffx.52035.1.S1_at CA714343 - - 1e-2 At5g61412 unknown protein C.G. S.X.
0.03 3e-3 42 Vitis vinifera 1615010_at CF406012 hypothetical protein LOC100260856 - 8e-3 At4g15120 VQ motif-containing protein C.G. S.X.
0.03 7e-2 38 Zea mays ZmAffx.1176.1.A1_at AW927389 - - 8e-1 At3g18250 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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