CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g09830

Gene name protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.80 89.8 At3g45640 823706 ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro. S.X. H.G.
0.73 85.5 At1g55450 841992 embryo-abundant protein-related F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA S.X. H.G.
0.67 81.6 At4g34150 829563 C2 domain-containing protein F:unknown;P:response to cold;C:unknown;MPFOBVA S.X. H.G.
0.46 59.8 At1g28380 839735 NSL1 (necrotic spotted lesions 1) This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.6 99.9 E-MEXP-807-raw-cel-1173273252
125.4 99.9 E-MEXP-807-raw-cel-1173273144
46.6 99.8 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
44.1 99.8 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
42.3 99.8 E-NASC-76-raw-cel-1359879106
40.9 99.8 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
39.5 99.8 E-MEXP-807-raw-cel-1173273116
37.0 99.7 E-MEXP-807-raw-cel-1173273170
34.4 99.7 E-NASC-76-raw-cel-1359879132
32.9 99.7 GSM131132 AtGen_B-18_2-4-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 4e-150 531 At5g03320 831876 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA C.G. S.X.
0.13 5e-11 69 At2g39110 818497 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.08 4e-5 50 At2g28940 817443 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.04 2e-4 48 At1g69790 843315 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA C.G. S.X.
0.01 1e-2 42 At2g39180 818503 CCR2 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 2) F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOFBVA C.G. S.X.
0.01 4e-2 40 At5g59270 836045 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 4e-2 40 At5g15080 831360 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 6e-11 69 Glycine max GmaAffx.37333.1.S1_at AW508164 - - 2e-11 At3g09830 protein kinase, putative C.G. S.X.
0.03 3e-1 36 Hordeum vulgare HV09K11u_at HV09K11u - - 1e+1 At4g34690 unknown protein C.G. S.X.
0.02 1e-3 46 Oryza sativa Os03g0130900 AK102717.1 - Protein kinase domain containing protein 5e-3 At1g20650 ATP binding / protein kinase/ protein serine/threonine kinase C.G. S.X.
0.31 1e-42 174 Populus trichocarpa PtpAffx.219768.1.S1_at pmrna35829 hypothetical protein - 1e-42 At3g09830 protein kinase, putative C.G. S.X.
0.03 4e-2 40 Triticum aestivum Ta.463.1.S1_at BF201937 - - 2e+0 At3g18570 glycine-rich protein / oleosin C.G. S.X.
0.06 3e+0 32 Vitis vinifera 1618958_at AY427138.1 - - 3e-1 At4g00680 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) C.G. S.X.
0.04 7e-5 48 Zea mays ZmAffx.914.1.A1_at AI770970 - - 2e-20 At5g13160 PBS1 (avrPphB susceptible 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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