Gene omics information

Query gene ID At3g09740
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4862.5At3g09740820132SYP71 (SYNTAXIN OF PLANTS 71)syntaxin of plants 71 (SYP71)S.X.H.G.
0.8894.0At5g39510833947SGR4 (SHOOT GRAVITROPSIM 4)Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.S.X.H.G.
0.7486.1At3g54300824597ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal.S.X.H.G.
0.6781.6At4g12230826831esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOMPAFVS.X.H.G.
0.5065.3At5g53530835435VPS26A (VACUOLAR PROTEIN SORTING 26A)Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.S.X.H.G.
0.4659.8At5g58060835918YKT61member of YKT6 Gene FamilyS.X.H.G.
0.4253.9At3g54840824649ARA6Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.S.X.H.G.
0.4050.8At5g22360832297ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.098.9GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
7.198.8GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
6.698.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
5.598.3GSM157329Coates_1-1_Col-0_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
5.498.3GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
5.398.3GSM131181AtGen_D-13_1-BS_REP1_ATH1GSE5617AtGenExpress: Light treatments
5.198.2GSM179958Arabidopsis roots, air treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
4.898.0GSM131178AtGen_D-10_1-FS_REP1_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.096e-342At3g45280823666SYP72 (SYNTAXIN OF PLANTS 72)syntaxin of plants 72 (SYP72)C.G.S.X.
0.053e-240At3g61450825318SYP73 (SYNTAXIN OF PLANTS 73)syntaxin of plants 73 (SYP73)C.G.S.X.
0.014e-136At5g53550835437YSL3 (YELLOW STRIPE LIKE 3)F:oligopeptide transporter activity;P:oligopeptide transport, response to nematode;C:unknown;BPFOAVC.G.S.X.
0.012e+034At5g49960835060binding / catalyticF:binding, catalytic activity;P:metabolic process;C:unknown;BPOAMC.G.S.X.
0.012e+034At5g53640835445F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.022e+034At5g21280832258hydroxyproline-rich glycoprotein family proteinF:unknown;P:unknown;C:unknown;MPOFBVAC.G.S.X.
0.012e+034At4g14290827070-F:unknown;P:unknown;C:plasma membrane;OBMFPVAC.G.S.X.
0.022e+034At4g13730827007RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular, chloroplast;MOFPBC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.431e-48194Glycine maxGma.8643.1.S1_atCD396524--6e-49At3g09740SYP71 (SYNTAXIN OF PLANTS 71)C.G.S.X.
0.101e-1479Hordeum vulgareContig5046_atContig5046--3e-6At3g45280SYP72 (SYNTAXIN OF PLANTS 72)C.G.S.X.
0.223e-1997Oryza sativaOs05g0553700AK103396.1-Syntaxin 71 (AtSYP71)2e-19At3g09740SYP71 (SYNTAXIN OF PLANTS 71)C.G.S.X.
0.329e-43174Populus trichocarpaPtp.4577.1.S1_s_atCK092288hypothetical protein-1e-42At3g09740SYP71 (SYNTAXIN OF PLANTS 71)C.G.S.X.
0.088e-1271Triticum aestivumTa.6402.2.A1_atBJ253916--2e-2At3g45280SYP72 (SYNTAXIN OF PLANTS 72)C.G.S.X.
0.022e+032Vitis vinifera1614458_atCB971484--1e+0At5g48595-C.G.S.X.
0.081e-1169Zea maysZm.15460.1.S1_atCF631770syntaxin 72-1e-2At3g45280SYP72 (SYNTAXIN OF PLANTS 72)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006612The process of directing proteins towards a membrane, usually using signals contained within the protein.
SGO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

04130Link to KEGG PATHWAYSNARE interactions in vesicular transport
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