CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g09650

Gene name HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g09650 820122 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. S.X. H.G.
0.46 59.8 At1g73170 843649 ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase F:nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding;P:proteolysis;C:chloroplast;BOPMAF S.X. H.G.
0.45 58.3 At3g01180 820294 AtSS2 (starch synthase 2) F:transferase activity, transferring glycosyl groups;P:cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process;C:chloroplast;OPBMFAV S.X. H.G.
0.43 55.3 At3g06510 819829 SFR2 (SENSITIVE TO FREEZING 2) Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing S.X. H.G.
0.42 53.9 At3g19170 821451 ATPREP1 (PRESEQUENCE PROTEASE 1) Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers S.X. H.G.
0.42 53.9 At5g58870 836004 ftsh9 (FtsH protease 9) encodes an FtsH protease that is localized to the chloroplast S.X. H.G.
0.38 46.7 At4g02260 828096 RSH1 (RELA-SPOT HOMOLOG 1) F:catalytic activity;P:response to wounding;C:chloroplast;BOPMAFV S.X. H.G.
0.36 43.6 At5g46390 834682 peptidase S41 family protein F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:thylakoid lumen, chloroplast thylakoid lumen;BOMP S.X. H.G.
0.36 43.6 At5g10470 830911 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane, membrane, chloroplast envelope;MOFPBAV S.X. H.G.
0.36 43.6 At3g29290 822586 emb2076 (embryo defective 2076) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POFMBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
116.1 99.9 GSM133781 Lindsey_1-6_globular-basal_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
39.7 99.8 Evans_2-2_col-WT-cold_ATH1
33.7 99.7 Evans_2-8_35s-FAD3-cold_ATH1
33.3 99.7 Evans_2-4_fab1-mut-cold_ATH1
31.9 99.7 Evans_2-10_col-aeq-cold_ATH1
31.0 99.7 E-ATMX-32-raw-cel-1562974681
28.8 99.7 Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1
24.6 99.6 GSM142866 GW001_ATH1_A11-Warre-6ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
24.5 99.6 Evans_2-6_fab2-mut-cold_ATH1
21.5 99.6 E-MEXP-557-raw-cel-879731511
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 8e-5 50 At2g42190 818819 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.02 1e-3 46 At4g01895 827073 systemic acquired resistance (SAR) regulator protein NIMIN-1-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.02 1e-3 46 At2g30280 817578 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.01 1e-3 46 At1g80810 844420 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 1e-3 46 At1g56340 842087 CRT1 (CALRETICULIN 1) Encodes calreticulin CRT1. C.G. S.X.
0.01 5e-3 44 At4g20900 827838 MS5 (MALE-STERILE 5) ms5 mutants are male sterile, pollen tetrads undergo an extra round of division after meiosis II without chromosome replication, resulting in chromosome abnormalities. Gene product has some similarity to SCP1, a rat synaptonemal complex protein. C.G. S.X.
0.02 2e-2 42 At5g46030 834644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.01 2e-2 42 At5g02190 831845 PCS1 (PROMOTION OF CELL SURVIVAL 1) encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 42 Glycine max Gma.84.1.S1_at BI701577 - - 5e-3 At3g08010 ATAB2 C.G. S.X.
0.02 6e-1 36 Hordeum vulgare HVSMEl0003G02r2_at HVSMEl0003G02r2 - - 1e-3 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.02 4e-2 42 Oryza sativa Os09g0496000 9637.m02815 - - 2e-1 At3g06000 leucine-rich repeat family protein C.G. S.X.
0.39 4e-26 121 Populus trichocarpa PtpAffx.213482.1.S1_at pmrna26357 hypothetical protein - 2e-26 At3g09650 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.52006.1.S1_at CA714803 - - 3e+0 At1g01305 unknown protein C.G. S.X.
0.02 1e-3 44 Vitis vinifera 1617637_at CB974429 hypothetical protein LOC100245010 - 1e-3 At1g20220 nucleic acid binding C.G. S.X.
0.10 9e-12 71 Zea mays Zm.15204.1.A1_at BM268605 - - 8e-12 At3g09650 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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