Gene omics information

Query gene ID At3g09650
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g09650820122HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.S.X.H.G.
0.4659.8At1g73170843649ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidaseF:nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding;P:proteolysis;C:chloroplast;BOPMAFS.X.H.G.
0.4558.3At3g01180820294AtSS2 (starch synthase 2)F:transferase activity, transferring glycosyl groups;P:cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process;C:chloroplast;OPBMFAVS.X.H.G.
0.4355.3At3g06510819829SFR2 (SENSITIVE TO FREEZING 2)Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezingS.X.H.G.
0.4253.9At3g19170821451ATPREP1 (PRESEQUENCE PROTEASE 1)Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowersS.X.H.G.
0.4253.9At5g58870836004ftsh9 (FtsH protease 9)encodes an FtsH protease that is localized to the chloroplastS.X.H.G.
0.3846.7At4g02260828096RSH1 (RELA-SPOT HOMOLOG 1)F:catalytic activity;P:response to wounding;C:chloroplast;BOPMAFVS.X.H.G.
0.3643.6At5g46390834682peptidase S41 family proteinF:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:thylakoid lumen, chloroplast thylakoid lumen;BOMPS.X.H.G.
0.3643.6At5g10470830911kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane, membrane, chloroplast envelope;MOFPBAVS.X.H.G.
0.3643.6At3g29290822586emb2076 (embryo defective 2076)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POFMBAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
116.199.9GSM133781Lindsey_1-6_globular-basal_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.699.6GSM142866GW001_ATH1_A11-Warre-6caGSE6177The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.028e-550At2g42190818819unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.021e-346At4g01895827073systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.021e-346At2g30280817578unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MBOFPVAC.G.S.X.
0.011e-346At1g80810844420bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.011e-346At1g56340842087CRT1 (CALRETICULIN 1)Encodes calreticulin CRT1.C.G.S.X.
0.015e-344At4g20900827838MS5 (MALE-STERILE 5)ms5 mutants are male sterile, pollen tetrads undergo an extra round of division after meiosis II without chromosome replication, resulting in chromosome abnormalities. Gene product has some similarity to SCP1, a rat synaptonemal complex protein.C.G.S.X.
0.022e-242At5g46030834644unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.012e-242At5g02190831845PCS1 (PROMOTION OF CELL SURVIVAL 1)encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-242Glycine maxGma.84.1.S1_atBI701577--5e-3At3g08010ATAB2C.G.S.X.
0.026e-136Hordeum vulgareHVSMEl0003G02r2_atHVSMEl0003G02r2--1e-3At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.024e-242Oryza sativaOs09g04960009637.m02815--2e-1At3g06000leucine-rich repeat family proteinC.G.S.X.
0.394e-26121Populus trichocarpaPtpAffx.213482.1.S1_atpmrna26357hypothetical protein-2e-26At3g09650HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)C.G.S.X.
0.023e-138Triticum aestivumTaAffx.52006.1.S1_atCA714803--3e+0At1g01305unknown proteinC.G.S.X.
0.021e-344Vitis vinifera1617637_atCB974429hypothetical protein LOC100245010-1e-3At1g20220nucleic acid bindingC.G.S.X.
0.109e-1271Zea maysZm.15204.1.A1_atBM268605--8e-12At3g09650HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006397Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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