CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g09300

Gene name ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g09300 820086 ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP S.X. H.G.
0.50 65.3 At5g48230 834876 ACAT2 (ACETOACETYL-COA THIOLASE 2) F:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:embryonic development ending in seed dormancy;C:peroxisome, plasma membrane;BOMFAP S.X. H.G.
0.38 46.7 At1g19360 838519 - F:unknown;P:unknown;C:endoplasmic reticulum;PO S.X. H.G.
0.35 41.6 At2g38700 818452 MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer. S.X. H.G.
0.14 6.8 At3g51460 824309 RHD4 (ROOT HAIR DEFECTIVE4) Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development. S.X. H.G.
0.13 5.8 At4g31340 829261 myosin heavy chain-related F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.9 99.8 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
35.1 99.7 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
23.0 99.6 GSM265429 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
22.6 99.6 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
22.6 99.6 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
20.3 99.6 GSM252691 Section of Root from 270 mm to 340 mm harvested immediately rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
20.1 99.6 GSM265428 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
19.3 99.6 GSM265420 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
19.1 99.6 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
18.6 99.5 GSM266662 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 1047 At5g02100 831841 UNE18 (UNFERTILIZED EMBRYO SAC 18) Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. C.G. S.X.
0.44 7e-41 169 At5g59420 836061 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP C.G. S.X.
0.01 7e-1 36 At3g55580 824723 regulator of chromosome condensation (RCC1) family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV C.G. S.X.
0.01 3e+0 34 At5g63950 836516 CHR24 (chromatin remodeling 24) F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:response to cadmium ion;C:unknown;MOBFPVA C.G. S.X.
0.01 3e+0 34 At5g58020 835914 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.01 3e+0 34 At4g33390 829476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 3e+0 34 At3g28630 822493 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM C.G. S.X.
0.01 3e+0 34 At3g50430 824207 unknown protein F:unknown;P:unknown;C:unknown;MP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 4e-46 186 Glycine max GmaAffx.78365.1.S1_at BG509076 - - 1e-95 At5g02100 UNE18 (UNFERTILIZED EMBRYO SAC 18) C.G. S.X.
0.23 3e-20 99 Hordeum vulgare Contig4464_at Contig4464 - - 1e-27 At5g59420 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) C.G. S.X.
0.23 2e-33 145 Oryza sativa Os03g0274000 AK060769.1 - Oxysterol-binding protein family protein 1e-24 At5g02100 UNE18 (UNFERTILIZED EMBRYO SAC 18) C.G. S.X.
0.27 6e-33 143 Populus trichocarpa Ptp.2461.1.S1_at CV245941 hypothetical protein - 3e-49 At5g02100 UNE18 (UNFERTILIZED EMBRYO SAC 18) C.G. S.X.
0.12 3e-12 73 Triticum aestivum Ta.26358.1.A1_at CD490823 - - 9e-5 At5g02100 UNE18 (UNFERTILIZED EMBRYO SAC 18) C.G. S.X.
0.26 6e-20 97 Vitis vinifera 1616909_at BQ796600 similar to oxysterol-binding family protein - 5e-32 At5g59420 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) C.G. S.X.
0.17 5e-9 61 Zea mays Zm.6413.1.A1_at BG836633 hypothetical protein LOC100272570 - 8e-31 At5g59420 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008202 The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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