Gene omics information

Query gene ID At3g09220
Gene name LAC7 (laccase 7)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6075.7At3g09220820078LAC7 (laccase 7)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).S.X.H.G.
0.7788.0At3g01420821135DOX1Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.S.X.H.G.
0.7788.0At4g37010829855caltractin, putative / centrin, putativeF:calcium ion binding;P:biological_process unknown;C:unknown;MFPOBS.X.H.G.
0.7788.0At4g37060829860PLP5 (PATATIN-LIKE PROTEIN 5)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFS.X.H.G.
0.6075.7At1g09740837502ethylene-responsive protein, putativeF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFMS.X.H.G.
0.5974.7At5g63600836480FLS5 (FLAVONOL SYNTHASE 5)encodes a protein whose sequence is similar to flavonol synthaseS.X.H.G.
0.5570.6At2g01530814682MLP329 (MLP-LIKE PROTEIN 329)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
77.999.9GSM157331Coates_1-3_Col-3_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
74.599.9GSM157336Coates_1-8_ara1/2mut_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
67.199.8GSM157335Coates_1-7_Col-3_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
65.199.8GSM157332Coates_1-4_ara1/2mut_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
53.699.8GSM157329Coates_1-1_Col-0_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
53.099.8GSM157340Coates_1-12_ara1/2mut_Rep3_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
51.299.8GSM131571ATGE_98_BGSE5631AtGenExpress: Developmental series (roots)
47.999.8GSM131570ATGE_98_AGSE5631AtGenExpress: Developmental series (roots)
47.099.8GSM131572ATGE_98_CGSE5631AtGenExpress: Developmental series (roots)
46.399.8GSM157339Coates_1-11_Col-3_Rep3_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-757At5g60020836124LAC17 (laccase 17)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.039e-756At5g01190831697LAC10 (laccase 10)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.022e-448At5g01050831812laccase family protein / diphenol oxidase family proteinputative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.042e-138At5g05390830421LAC12 (laccase 12)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.012e-138At5g48100834862TT10 (TRANSPARENT TESTA 10)Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds.C.G.S.X.
0.032e-138At5g07130830604LAC13 (laccase 13)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.022e-138At2g30210817571LAC3 (laccase 3)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).C.G.S.X.
0.028e-136At5g21100832234L-ascorbate oxidase, putativeF:oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity;P:oxidation reduction;C:plant-type cell wall;BFPMOAC.G.S.X.
0.018e-136At5g13110831150G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2)Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-346Glycine maxGmaAffx.3562.1.S1_s_atBI321106--7e-3At2g40370LAC5 (laccase 5)C.G.S.X.
0.021e-138Hordeum vulgareContig6526_atContig6526--7e-1At5g11550bindingC.G.S.X.
0.055e-1377Oryza sativaOs01g0850700AK109431.2-Multicopper oxidase, type 1 domain containingprotein3e-13At3g09220LAC7 (laccase 7)C.G.S.X.
0.055e-1273Populus trichocarpaPtpAffx.225610.1.S1_atpmrna45070hypothetical protein-9e-4At5g01050laccase family protein / diphenol oxidase family proteinC.G.S.X.
0.029e-136Triticum aestivumTaAffx.105650.1.S1_atCA732063--6e-3At2g38080IRX12 (IRREGULAR XYLEM 12)C.G.S.X.
0.024e+032Vitis vinifera1619620_atCB348520hypothetical protein LOC100256257-2e-1At3g22380TIC (TIME FOR COFFEE)C.G.S.X.
0.019e-238Zea maysZm.14617.1.A1_atBM080453Hypothetical protein LOC100191188-2e+0At2g33130RALFL18 (ralf-like 18)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0046274The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units.
LGO:0055114The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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