CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g09010

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.15 7.8 At3g09010 820053 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.57 73.8 At4g11370 826739 RHA1A Encodes a putative RING-H2 finger protein RHA1a. S.X. H.G.
0.50 65.3 At1g33030 840198 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM S.X. H.G.
0.44 57.2 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA S.X. H.G.
0.40 50.8 At1g28190 839713 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
199.6 100.0 E-MEXP-1443-raw-cel-1581869745
137.9 99.9 E-MEXP-1443-raw-cel-1581869803
60.8 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
57.9 99.8 GSM134405 St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
53.3 99.8 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
51.8 99.8 GSM134351 St.Clair_1-12_407_Col-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5752 Expression Level Polymorphism Project (ELP) - Col-0
45.8 99.8 GSM134385 St.Clair_1-46_293_Est_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
41.3 99.8 GSM322550 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
40.7 99.8 GSM134459 St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
38.9 99.8 GSM134350 St.Clair_1-11_333_Col-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5752 Expression Level Polymorphism Project (ELP) - Col-0
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-4 46 At3g25560 822143 NIK2 (NSP-INTERACTING KINASE 2) F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.03 9e-3 42 At5g10530 830918 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 9e-3 42 At1g51940 841622 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 9e-3 42 At1g53420 841777 serine/threonine protein kinase-related F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 9e-3 42 At1g29740 839852 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 4e-2 40 At1g53430 841778 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-12 75 Glycine max Gma.13198.1.S1_at CD391115 - - 5e-16 At3g09010 protein kinase family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare EBro02_SQ005_I23_at EBro02_SQ005_I23 - - 4e+0 Atmg00890 - C.G. S.X.
0.05 5e-6 54 Oryza sativa Os06g0676600 AK103523.1 - Protein kinase domain containing protein 4e-6 At3g09010 protein kinase family protein C.G. S.X.
0.06 2e-4 48 Populus trichocarpa PtpAffx.218447.1.S1_at pmrna34066 hypothetical protein - 1e-11 At1g16670 protein kinase family protein C.G. S.X.
0.08 6e-4 46 Triticum aestivum TaAffx.18649.1.S1_at CA681830 - - 4e+0 At3g30849 unknown protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1608969_at CB969747 hypothetical protein LOC100265723 - 2e-40 At1g66150 TMK1 (TRANSMEMBRANE KINASE 1) C.G. S.X.
0.08 7e-5 48 Zea mays Zm.4119.1.S1_at AI854985 ATP binding protein - 2e-4 At3g09010 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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