Gene omics information

Query gene ID At3g09000
Gene name proline-rich family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g09000820052proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAS.X.H.G.
0.4050.8At4g39370830092UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27)Encodes a ubiquitin-specific protease.S.X.H.G.
0.3541.6At3g06540819832GDP dissociation inhibitor family protein / Rab GTPase activator family proteinF:RAB GDP-dissociation inhibitor activity;P:intracellular protein transport, regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPBS.X.H.G.
0.3338.1At3g03570821234-F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPOS.X.H.G.
0.3235.7At5g38560833844protein kinase family proteinF:structural constituent of cell wall, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MBOFPVAS.X.H.G.
0.3133.8At3g26400822244EIF4B1member of eIF4B - eukaryotic initiation factor 4BS.X.H.G.
0.3032.1At5g23520832417-F:unknown;P:unknown;C:cytoplasm;FPMBOS.X.H.G.
0.3032.1At1g01260839545basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOBS.X.H.G.
0.3032.1At4g24390828541F-box family protein (FBX14)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PMOFS.X.H.G.
0.2930.3At3g52030824366F-box family protein / WD-40 repeat family proteinF:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
103.799.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
38.699.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.099.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.499.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.399.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
29.099.7GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.999.7GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
27.299.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.499.7GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.899.7GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.146e-1789At5g01280831711-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBVPAC.G.S.X.
0.095e-550At2g40070818595-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVAC.G.S.X.
0.038e-446At3g08670820014unknown proteinF:unknown;P:response to oxidative stress;C:unknown;MFOBPVAC.G.S.X.
0.053e-344At2g38160818394unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMBOPVC.G.S.X.
0.028e-136At4g07820826263pathogenesis-related protein, putativeF:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBOC.G.S.X.
0.018e-136At3g15095820740unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-242Glycine maxGmaAffx.50522.1.S1_atBI787808--3e-3At2g40070-C.G.S.X.
0.022e+034Hordeum vulgareContig11376_s_atContig11376--1e+1At5g32597unknown proteinC.G.S.X.
0.023e-552Oryza sativaOs01g0141900AK070848.1--3e-7At2g40070-C.G.S.X.
0.073e-448Populus trichocarpaPtpAffx.213620.1.S1_atpmrna26598hypothetical protein-2e-4At3g09000proline-rich family proteinC.G.S.X.
0.022e-138Triticum aestivumTa.8450.3.S1_atCA698357--4e+0At2g40830RHC1AC.G.S.X.
0.024e+032Vitis vinifera1617333_atCF568798hypothetical protein LOC100246920-8e-2At3g52630-C.G.S.X.
0.031e-344Zea maysZm.4585.1.A1_atCF631656hypothetical protein LOC100279421-2e-3At3g09000proline-rich family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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