CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g08860

Gene name alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At3g08860 820034 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative F:pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity;P:unknown;C:mitochondrion;BOMFAPV S.X. H.G.
0.77 88.0 At1g66390 842957 MYB90 (MYB DOMAIN PROTEIN 90) production of anthocyanin pigment 2 protein (PAP2) S.X. H.G.
0.69 82.9 At1g56600 842114 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO S.X. H.G.
0.53 68.6 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB S.X. H.G.
0.53 68.6 At5g15190 831371 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.52 67.4 At5g19460 832066 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP S.X. H.G.
0.50 65.3 At1g07430 837255 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV S.X. H.G.
0.50 65.3 At2g41190 818718 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPOFBAV S.X. H.G.
0.49 63.5 At5g54060 835489 UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase) F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO S.X. H.G.
0.47 61.2 At3g13672 820573 seven in absentia (SINA) family protein F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
161.1 99.9 E-ATMX-1-raw-cel-1112746154
144.3 99.9 GSM269815 T6 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
134.7 99.9 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
134.0 99.9 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
114.3 99.9 GSM131305 AtGen_6-2621_Osmoticstress-Roots-24.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
101.8 99.9 GSM269817 T8 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
101.1 99.9 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
91.5 99.9 GSM260955 A2-LLOYD-PHO_REP2 GSE10326 Transcriptome analysis of pho3
79.2 99.9 E-ATMX-1-raw-cel-1112746209
75.3 99.9 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 8e-13 75 At2g38400 818421 AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3) alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA, C.G. S.X.
0.02 1e-2 42 At4g39660 830120 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2) alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA, C.G. S.X.
0.01 2e-1 38 At1g51770 841603 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.03 7e-1 36 At3g11510 820324 40S ribosomal protein S14 (RPS14B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus;BOPMAF C.G. S.X.
0.01 7e-1 36 At2g30140 817566 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to cyclopentenone;C:cellular_component unknown;PMBVOF C.G. S.X.
0.01 7e-1 36 At1g58340 842203 ZF14 F:drug transporter activity, antiporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM C.G. S.X.
0.01 3e+0 34 At5g27110 832769 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-1 38 Glycine max GmaAffx.3378.1.S1_at AW351136 - - 1e-19 At2g38400 AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3) C.G. S.X.
0.10 2e-8 59 Hordeum vulgare Contig7739_at Contig7739 - - 9e-7 At4g39660 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2) C.G. S.X.
0.10 6e-9 63 Oryza sativa Os03g0338000 AK121399.1 - Alanine:glyoxylate aminotransferase-like protein(Fragment) 5e-9 At3g08860 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative C.G. S.X.
0.06 1e-9 65 Populus trichocarpa PtpAffx.144719.1.S1_at BU874446 hypothetical protein - 6e-12 At2g38400 AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3) C.G. S.X.
0.13 8e-7 56 Triticum aestivum Ta.7803.1.S1_at BE404750 - - 5e-7 At3g08860 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative C.G. S.X.
0.25 2e-14 79 Vitis vinifera 1607476_at CB978990 hypothetical protein LOC100258727 - 4e-14 At3g08860 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative C.G. S.X.
0.03 8e-2 38 Zea mays Zm.2987.1.S1_at BG550493 - - 3e-34 At4g39660 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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