Gene omics information

Query gene ID At3g08730
Gene name PK1 (PROTEIN-SERINE KINASE 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At3g08730820020PK1 (PROTEIN-SERINE KINASE 1)Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues.S.X.H.G.
0.8290.9At1g10740837617unknown proteinF:unknown;P:glycerol biosynthetic process;C:endomembrane system;BOPFMS.X.H.G.
0.7586.9At5g47620834812heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBAS.X.H.G.
0.7284.8At1g06700837180serine/threonine protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.7184.2At3g12620820442protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBVS.X.H.G.
0.6882.2At1g05960837106bindingF:binding;P:biological_process unknown;C:plasma membrane;MFPBOS.X.H.G.
0.6781.6At5g61960836317AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1)A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.S.X.H.G.
0.6378.1At3g07880819979Rho GDP-dissociation inhibitor family proteinF:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPOS.X.H.G.
0.6378.1At2g19880816507ceramide glucosyltransferase, putativeF:ceramide glucosyltransferase activity;P:biological_process unknown;C:endomembrane system;MBPFAOS.X.H.G.
0.6277.3At3g62660825440GATL7 (Galacturonosyltransferase-like 7)Encodes a protein with putative galacturonosyltransferase activity.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
95.499.9E-MEXP-1138-raw-cel-1432773322
77.599.9E-MEXP-1138-raw-cel-1432773066
77.199.9E-MEXP-1138-raw-cel-1432773034
76.199.9E-MEXP-1138-raw-cel-1432773258
73.699.9E-MEXP-1138-raw-cel-1432773290
71.299.9E-MEXP-1138-raw-cel-1432772938
69.699.9E-MEXP-1138-raw-cel-1432773002
67.499.8GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
65.899.8E-MEXP-285-raw-cel-440782791
61.999.8E-MEXP-1138-raw-cel-1432773354
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8001245At3g08720820019S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.C.G.S.X.
0.021e-242At2g20050816524ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphataseF:cAMP-dependent protein kinase regulator activity, protein kinase activity, protein serine/threonine phosphatase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation, protein amino acid dephosphorylation, N-terminal protein myristoylation, regulation of protein amino acid phosphorylation;C:plasma membrane;MOPFBVAC.G.S.X.
0.011e-242At1g48490841270kinaseF:kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVAC.G.S.X.
0.022e-138At3g45410823679lectin protein kinase family proteinencodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.C.G.S.X.
0.012e-138At3g50370824199unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.017e-136At3g52890824455KIPK (KCBP-interacting protein kinase)KCBP-interacting protein kinase interacts specifically with the tail region of KCBPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.298e-26119Glycine maxGma.3835.1.S1_atBU084442--2e-37At3g08720S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)C.G.S.X.
0.191e-1997Hordeum vulgareContig8995_atContig8995--3e-19At3g08730PK1 (PROTEIN-SERINE KINASE 1)C.G.S.X.
0.244e-38161Oryza sativaOs03g0334000AK072649.1-Ribosomal protein S6 kinase2e-42At3g08720S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)C.G.S.X.
0.361e-49198Populus trichocarpaPtpAffx.206358.1.S1_atpmrna12622hypothetical protein-1e-49At3g08730PK1 (PROTEIN-SERINE KINASE 1)C.G.S.X.
0.146e-1789Triticum aestivumTa.9084.1.S1_atCD911695--3e-19At3g08720S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)C.G.S.X.
0.383e-34145Vitis vinifera1613210_atCB970149hypothetical protein LOC100258607-4e-50At3g08720S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)C.G.S.X.
0.122e-550Zea maysZm.12589.1.S1_a_atAY389497.1hypothetical protein LOC100193645 /// ribosomal protein S6 kinase-4e-12At3g08720S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006468The process of introducing a phosphate group on to a protein.
XGO:0006970A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
SGO:0045727Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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