CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g08670

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g08670 820014 unknown protein F:unknown;P:response to oxidative stress;C:unknown;MFOBPVA S.X. H.G.
0.18 11.4 At4g24500 828552 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBV S.X. H.G.
0.17 10.2 At2g28360 817384 - F:unknown;P:biological_process unknown;C:endomembrane system;MOFBPVA S.X. H.G.
0.10 3.4 At1g13170 837875 ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP S.X. H.G.
0.07 1.9 At1g27850 839678 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVA S.X. H.G.
0.06 1.4 At3g27320 822351 hydrolase F:hydrolase activity;P:metabolic process;C:unknown;BOPFMAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
150.6 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
136.8 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
126.6 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
118.2 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
117.8 99.9 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
110.7 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
109.8 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
109.7 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
102.8 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
99.6 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 9e-4 46 At3g09000 820052 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOBPVA C.G. S.X.
0.01 3e-3 44 At2g33170 817878 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 1e-2 42 At4g17950 827520 DNA-binding family protein F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBV C.G. S.X.
0.02 5e-2 40 At5g08520 830751 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFB C.G. S.X.
0.02 5e-2 40 At4g27460 828855 CBS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 5e-2 40 At1g80610 844400 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.01 5e-2 40 At1g75520 843888 SRS5 (SHI-RELATED SEQUENCE 5) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. C.G. S.X.
0.01 2e-1 38 At5g25110 832582 CIPK25 (CBL-INTERACTING PROTEIN KINASE 25) member of AtCIPKs C.G. S.X.
0.01 2e-1 38 At5g49700 835033 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMBF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-9 65 Glycine max Gma.4692.1.S1_at AW201656 - - 5e-10 At3g08670 unknown protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare EBem07_SQ003_D09_at EBem07_SQ003_D09 - - 4e-3 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) C.G. S.X.
0.01 2e+0 36 Oryza sativa Os.57226.1.S1_at - - - 0 C.G. S.X.
0.07 3e-1 38 Populus trichocarpa PtpAffx.75982.1.S1_at CV250943 hypothetical protein - 4e-2 At3g08670 unknown protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.104796.1.S1_x_at CA744716 - - 3e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.05 3e-4 46 Vitis vinifera 1608016_at CF414793 hypothetical protein LOC100267210 - 3e-4 At3g08670 unknown protein C.G. S.X.
0.01 1e+0 34 Zea mays Zm.12971.1.A1_at CA402563 hypothetical protein LOC100194271 - 2e+0 At4g00850 GIF3 (GRF1-INTERACTING FACTOR 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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