Gene omics information

Query gene ID At3g08640
Gene name alphavirus core protein family
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g08640820011alphavirus core protein familyF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, plastid, chloroplast envelope;MBPOFVAS.X.H.G.
0.2014.4At2g24200816954cytosol aminopeptidaseF:manganese ion binding, metalloexopeptidase activity, aminopeptidase activity;P:response to cadmium ion, proteolysis;C:vacuole;OBMPFAS.X.H.G.
0.124.9At4g32390829374phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBS.X.H.G.
0.092.8At5g550708355982-oxoacid dehydrogenase family proteinF:dihydrolipoyllysine-residue succinyltransferase activity, acyltransferase activity;P:response to oxidative stress, metabolic process;C:cytosolic ribosome, mitochondrion;BOMPFVAS.X.H.G.
0.071.9At5g43960834419nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MPFOBVAS.X.H.G.
0.051.1At3g10920820263MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)manganese superoxide dismutase (MSD1)S.X.H.G.
0.051.1At3g25120822103mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinF:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex;PFOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.799.6GSM131160AtGen_C-10_1-Pi-6_REP1_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
22.999.6GSM131161AtGen_C-11_2-Pi-6_REP2_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
14.499.4GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
12.499.3GSM131162AtGen_C-12_3-Pi-6_REP3_ATH1GSE5616AtGenExpress: Response to Phytophthora infestans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.820662At3g08630820010-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOFVC.G.S.X.
0.018e-342At3g59140825083ATMRP14member of MRP subfamilyC.G.S.X.
0.013e-240At5g67470836883formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:in 7 components;MPOFBVAC.G.S.X.
0.013e-240At5g02430831780WD-40 repeat family proteinF:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAVC.G.S.X.
0.013e-240At5g02010831858ROPGEF7Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.C.G.S.X.
0.013e-240At2g15880816084leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAC.G.S.X.
0.033e-240At2g21060816641ATGRP2B (GLYCINE-RICH PROTEIN 2B)glycine-rich protein (AtGRP2b)C.G.S.X.
0.033e-240At1g12810837837proline-rich family proteinF:unknown;P:unknown;C:unknown;MPFOBVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.057e-446Glycine maxGmaAffx.88478.2.S1_atAW704592--2e-4At3g08640alphavirus core protein familyC.G.S.X.
0.057e-857Hordeum vulgareContig7443_atContig7443--2e-7At3g08640alphavirus core protein familyC.G.S.X.
0.097e-859Oryza sativaOs.7103.1.S1_at---0C.G.S.X.
0.091e-552Populus trichocarpaPtpAffx.96155.1.S1_atBP930091--1e-5At3g08640alphavirus core protein familyC.G.S.X.
0.033e-240Triticum aestivumTaAffx.121228.1.S1_atBG907241--6e-3At3g08640alphavirus core protein familyC.G.S.X.
0.036e-134Vitis vinifera1618771_s_atCD715283hypothetical protein LOC100262843-3e-4At1g25560TEM1 (TEMPRANILLO 1)C.G.S.X.
0.101e-963Zea maysZm.10024.1.S1_atBQ529117--3e-9At3g08640alphavirus core protein familyC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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