Gene omics information

Query gene ID At3g08040
Gene name FRD3 (FERRIC REDUCTASE DEFECTIVE 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5673.0At3g08040819995FRD3 (FERRIC REDUCTASE DEFECTIVE 3)Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.S.X.H.G.
0.3948.4At5g56080835707NAS2 (NICOTIANAMINE SYNTHASE 2)Encodes a protein with nicotianamine synthase activity. Its transcript levels rise in roots in response to zinc deficiency and rise in leaves in response to elevated levels of zinc.S.X.H.G.
0.3338.1At4g12330826842CYP706A7member of CYP706AS.X.H.G.
0.3133.8At3g25190822112nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAS.X.H.G.
0.3133.8At4g30450829168glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVAS.X.H.G.
0.2726.2At5g10580830923unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOS.X.H.G.
0.2420.7At3g23430821924PHO1 (phosphate 1)mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.S.X.H.G.
0.2420.7At1g08320837353bZIP family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFS.X.H.G.
0.2420.7At1g74760---S.X.H.G.
0.2319.3At1g72200843552zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
251.2100.0GSM75520slr-1 2h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
170.3100.0GSM75521slr-1 6h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
145.199.9GSM75516slr-1 0h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
141.699.9GSM75517slr-1 2h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
125.999.9GSM265424Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
114.699.9GSM75518slr-1 6h NAA replicate 1GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
98.999.9GSM75519slr-1 0h NAA replicate 2GSE3350SLR/IAA14-dependent auxin induced lateral root initiation
87.999.9GSM265473Arabidopsis, whole roots, -Fe, 72 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
79.299.9GSM265425Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
71.799.9GSM265471Arabidopsis, whole roots, -Fe, 48 hour, rep 1GSE10502Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.071e-1171At1g51340841557MATE efflux family proteinF:drug transporter activity, antiporter activity;P:multidrug transport;C:endomembrane system, membrane;BOAPFMC.G.S.X.
0.021e-552At4g38380829995antiporter/ drug transporterF:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast;BOPAFMC.G.S.X.
0.012e-138At3g47170823870transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOC.G.S.X.
0.012e-138At3g50690824233leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.022e-138At2g30790817630PSBP-2 (photosystem II subunit P-2)Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.C.G.S.X.
0.012e-138At2g37670818344WD-40 repeat family proteinF:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAVC.G.S.X.
0.018e-136At5g19700832090MATE efflux protein-relatedF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAC.G.S.X.
0.018e-136At5g61370836258pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.087e-550Glycine maxGma.17072.1.S1_atBE822747--3e-5At3g08040FRD3 (FERRIC REDUCTASE DEFECTIVE 3)C.G.S.X.
0.043e-240Hordeum vulgareContig9960_atContig9960aluminum activated citrate transporter-4e-2At3g08040FRD3 (FERRIC REDUCTASE DEFECTIVE 3)C.G.S.X.
0.031e-1069Oryza sativaOs01g09191009633.m03133--2e-1At3g48880F-box family proteinC.G.S.X.
0.072e-861Populus trichocarpaPtpAffx.213326.1.S1_atpmrna26064hypothetical protein-2e-32At1g51340MATE efflux family proteinC.G.S.X.
0.028e-136Triticum aestivumTa.25708.1.A1_atCD373993--5e+0At5g09260VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)C.G.S.X.
0.052e-550Vitis vinifera1614987_atCF609746hypothetical protein LOC100241685-1e-15At1g51340MATE efflux family proteinC.G.S.X.
0.025e+032Zea maysZm.683.1.S1_atCF972456barley mlo defense gene homolog5-9e-8At2g33670MLO5 (MILDEW RESISTANCE LOCUS O 5)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006879Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage