CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g07880

Gene name Rho GDP-dissociation inhibitor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.64 78.9 At3g07880 819979 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO S.X. H.G.
0.69 82.9 At5g47620 834812 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA S.X. H.G.
0.67 81.6 At1g05960 837106 binding F:binding;P:biological_process unknown;C:plasma membrane;MFPBO S.X. H.G.
0.67 81.6 At1g22200 838825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFP S.X. H.G.
0.67 81.6 At1g54920 841930 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOPFB S.X. H.G.
0.64 78.9 At5g58950 836012 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVA S.X. H.G.
0.63 78.1 At3g12620 820442 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBV S.X. H.G.
0.61 76.7 At5g61960 836317 AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN 1) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices. S.X. H.G.
0.60 75.7 At4g20380 827786 zinc finger protein (LSD1) LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge S.X. H.G.
0.57 73.8 At3g57480 824915 zinc finger (C2H2 type, AN1-like) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
55.5 99.8 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
48.3 99.8 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
45.9 99.8 E-MEXP-1138-raw-cel-1432773066
45.4 99.8 E-MEXP-1138-raw-cel-1432773034
44.2 99.8 E-MEXP-285-raw-cel-440782725
42.5 99.8 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
41.8 99.8 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
40.3 99.8 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
39.1 99.8 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
38.9 99.8 E-MEXP-1138-raw-cel-1432772906
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 3e-20 99 At1g62450 842543 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO C.G. S.X.
0.17 6e-9 61 At1g12070 837759 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO C.G. S.X.
0.03 2e-2 40 At3g50580 824222 unknown protein F:unknown;P:unknown;C:endomembrane system;MOBPFVA C.G. S.X.
0.02 4e-1 36 At3g62630 825437 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBA C.G. S.X.
0.02 4e-1 36 At3g12970 820483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBV C.G. S.X.
0.04 4e-1 36 At2g17560 816263 HMGB4 (HIGH MOBILITY GROUP B 4) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. C.G. S.X.
0.01 4e-1 36 At1g07850 837300 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFO C.G. S.X.
0.01 4e-1 36 At1g16630 838232 unknown protein F:unknown;P:unknown;C:chloroplast;MOFBVPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 3e-18 93 Glycine max Gma.7146.1.A1_at BE659282 - - 2e-11 At1g62450 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.11 1e-5 50 Hordeum vulgare Contig13621_s_at Contig13621 - - 2e-4 At1g12070 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.19 3e-12 73 Oryza sativa Os06g0318300 AK060873.1 - Rho GDP-dissociation inhibitor 1 (Rho GDI-1)(AtRhoGDI1) 2e-7 At1g12070 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.60 1e-41 171 Populus trichocarpa PtpAffx.211901.1.S1_at pmrna23382 hypothetical protein - 8e-42 At3g07880 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.07 4e-1 36 Triticum aestivum Ta.19319.1.S1_x_at CA649723 - - 1e-4 At1g12070 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.10 2e-18 91 Vitis vinifera 1608312_at CA809526 hypothetical protein LOC100262024 - 5e-18 At3g07880 Rho GDP-dissociation inhibitor family protein C.G. S.X.
0.20 2e-7 56 Zea mays Zm.4077.1.S1_x_at AY105154.1 - - 9e-7 At3g07880 Rho GDP-dissociation inhibitor family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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