CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g07810

Gene name heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g07810 819972 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MBOPFVA S.X. H.G.
0.63 78.1 At1g18580 838439 GAUT11 (Galacturonosyltransferase 11) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.61 76.7 At5g54830 835573 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein F:dopamine beta-monooxygenase activity, monooxygenase activity;P:histidine catabolic process, metabolic process;C:endomembrane system;MPBFOA S.X. H.G.
0.55 70.6 At2g28520 817400 VHA-A1 (VACUOLAR PROTON ATPASE A 1) Vacuolar proton ATPase subunit VHA-a isoform 1. Localized in the trans-Golgi network. S.X. H.G.
0.49 63.5 At4g23640 828464 TRH1 (TINY ROOT HAIR 1) Functions as a potassium transporter and is required for the establishment of root tip growth. S.X. H.G.
0.46 59.8 At4g32640 829399 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular protein transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOBPVA S.X. H.G.
0.44 57.2 At4g00570 828222 malate oxidoreductase, putative F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:oxidation reduction, malate metabolic process, metabolic process;C:mitochondrion, chloroplast;BOMPFA S.X. H.G.
0.44 57.2 At5g14950 831347 GMII (GOLGI ALPHA-MANNOSIDASE II) Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans. S.X. H.G.
0.44 57.2 At3g10380 820201 SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) Subunit of the Putative Arabidopsis Exocyst Complex S.X. H.G.
0.44 57.2 At5g39500 833946 pattern formation protein, putative F:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.6 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
12.4 99.3 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.5 99.3 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.5 99.3 GSM40554 Polysomal mRNA, non-stress GSE2218 Changes in transcript abundance and association with large polysomes in response to hypoxia stress
11.4 99.3 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
11.2 99.2 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
11.0 99.2 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.2 99.2 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.8 99.1 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.8 99.1 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 1e-11 71 At5g47620 834812 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA C.G. S.X.
0.10 3e-9 63 At4g26650 828772 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBVA C.G. S.X.
0.05 3e-6 54 At5g55550 835649 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-7 57 Glycine max GmaAffx.72401.1.S1_at AW830235 - - 2e-17 At4g26650 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.09 2e-9 63 Hordeum vulgare Contig6399_at Contig6399 - - 5e-9 At3g07810 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.09 3e-23 111 Oryza sativa Os07g0584500 AK067725.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e-23 At3g07810 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.35 2e-42 174 Populus trichocarpa PtpAffx.202462.1.S1_x_at pmrna4928 hypothetical protein - 1e-42 At3g07810 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.04 6e-11 69 Triticum aestivum TaAffx.111057.1.S1_at CA648870 - - 1e-8 At5g47620 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.07 9e-7 54 Vitis vinifera 1606802_at CF207667 hypothetical protein LOC100246008 - 5e-9 At5g47620 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.02 2e-2 40 Zea mays Zm.8862.1.A1_at BM268559 - - 3e-1 At4g14110 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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