Gene omics information

Query gene ID At3g07800
Gene name thymidine kinase, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At3g07800819971thymidine kinase, putativeF:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAFS.X.H.G.
0.7586.9At4g02390828049APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C., thought to be involved in post-translational modification .S.X.H.G.
0.6781.6At5g03780831726TRFL10 (TRF-LIKE 10)Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.S.X.H.G.
0.5368.6At5g20850832208ATRAD51Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.S.X.H.G.
0.4761.2At1g08260837346TIL1 (TILTED 1)Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
143.499.9GSM131369AtGen_6-5321_Genotoxicstress-Roots-3.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
123.599.9GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
116.199.9GSM131370AtGen_6-5322_Genotoxicstress-Roots-3.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
102.799.9GSM131374AtGen_6-5422_Genotoxicstress-Roots-6.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
93.999.9GSM133949Murray_2-5_T8-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
89.499.9GSM133947Murray_2-3_T4-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
86.199.9GSM131381AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
85.299.9GSM131373AtGen_6-5421_Genotoxicstress-Roots-6.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
83.599.9GSM131378AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
82.599.9GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.132e-654At5g23070832371thymidine kinase, putativeF:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:unknown;BOVMPAFC.G.S.X.
0.019e-238At5g40480834046EMB3012 (embryo defective 3012)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBPC.G.S.X.
0.024e-136At5g27530832813glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMVAC.G.S.X.
0.024e-136At5g03720831749AT-HSFA3Member of Heat Stress Transcription Factor (Hsf) family. Expression is regulated by DREB2A and in turn HSFA3 regulates the expression of hsps Hsp18.1-CI and Hsp26.5-MII35S. Involved in establishing thermotolerence.C.G.S.X.
0.014e-136At1g06290837140ACX3 (ACYL-COA OXIDASE 3)Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids.C.G.S.X.
0.031e+034At5g59870836109HTA6Encodes HTA6, a histone H2A protein.C.G.S.X.
0.021e+034At5g42470834254-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.011e+034At4g11670826772-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFC.G.S.X.
0.021e+034At4g04950825835thioredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;BOMPFAVC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.202e-963Glycine maxGmaAffx.27192.2.S1_s_atBQ630533--9e-10At3g07800thymidine kinase, putativeC.G.S.X.
0.093e-961Hordeum vulgareContig11561_atContig11561--1e-8At3g07800thymidine kinase, putativeC.G.S.X.
0.128e-756Oryza sativaOs03g0113100AF066050.1-Thymidine kinase family protein8e-7At3g07800thymidine kinase, putativeC.G.S.X.
0.372e-1893Populus trichocarpaPtpAffx.202461.1.S1_atpmrna4927hypothetical protein-1e-18At3g07800thymidine kinase, putativeC.G.S.X.
0.036e+032Triticum aestivumTaAffx.21983.2.S1_atCA703146--1e-1At5g59880ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)C.G.S.X.
0.032e+032Vitis vinifera1621152_atCD718631--1e+0At1g60850ATRPAC42C.G.S.X.
0.039e+030Zea maysZmAffx.1520.1.S1_at11990232-57--6e-66Atcg00780-C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00122Link to KaPPA-View 4Pyrimidine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00240Link to KEGG PATHWAYPyrimidine metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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