Gene omics information

Query gene ID At3g07430
Gene name emb1990 (embryo defective 1990)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g07430819931emb1990 (embryo defective 1990)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;BOPS.X.H.G.
0.5773.8At3g53460824514CP29Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.S.X.H.G.
0.5368.6At3g52960824462peroxiredoxin type 2, putativeF:oxidoreductase activity, antioxidant activity;P:defense response to bacterium, peptidyl-cysteine S-nitrosylation;C:thylakoid, chloroplast stroma, chloroplast, plant-type cell wall;OBFPMAS.X.H.G.
0.5065.3At4g39460830101SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1)Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.S.X.H.G.
0.4862.5At3g51140824278-F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BPOS.X.H.G.
0.4558.3At3g27180822337unknown proteinF:unknown;P:unknown;C:chloroplast;BOMPAFS.X.H.G.
0.4457.2At2g33430817907DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)F:molecular_function unknown;P:plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA);C:chloroplast;PS.X.H.G.
0.4457.2At3g18680821399aspartate/glutamate/uridylate kinase family proteinF:uridylate kinase activity, UMP kinase activity;P:amino acid biosynthetic process, 'de novo' pyrimidine base biosynthetic process, pyrimidine nucleotide biosynthetic process;C:chloroplast;BOAPFS.X.H.G.
0.4355.3At2g44640819072-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope;POS.X.H.G.
0.4253.9At5g58250835937unknown proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast;OBPS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
20.999.6GSM133280RIKEN-GODA2B-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
19.999.6GSM133277RIKEN-GODA1A-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
18.899.5GSM133264RIKEN-GODA3B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
18.799.5GSM305281control, biological replicate 1GSE12137LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
18.799.5GSM133254RIKEN-GODA11B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
17.899.5GSM133256RIKEN-GODA12B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
17.799.5GSM133278RIKEN-GODA1B-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
17.699.5GSM133274RIKEN-GODA8B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
17.699.5GSM133252RIKEN-GODA10B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
15.599.5GSM133282RIKEN-GODA3B-MGSE5697AtGenExpress: Comparison of plant hormone-related mutants
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.322e-30133At4g27990828912YGGT family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BOPC.G.S.X.
0.042e-240At1g17730838349VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFOAC.G.S.X.
0.019e-238At4g10710826665SPT16 (global transcription factor C)encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.C.G.S.X.
0.013e-136At5g64710836592unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMBFOAC.G.S.X.
0.023e-136At4g13030826917unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPMFOC.G.S.X.
0.033e-136At3g03490821248PEX19-1 (peroxin 19-1)F:molecular_function unknown;P:peroxisome organization;C:peroxisome;MFOBPAC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.187e-25115Glycine maxGma.10909.1.S1_atCD398353--4e-16At4g27990YGGT family proteinC.G.S.X.
0.033e+032Hordeum vulgareAJ009762.1_atAJ009762.1--3e-7At1g19730ATTRX4C.G.S.X.
0.023e+034Oryza sativaOs09g03422009637.m01464--1e-1At3g14750unknown proteinC.G.S.X.
0.144e-1789Populus trichocarpaPtp.2200.1.A1_s_atCV260845hypothetical protein-2e-34At4g27990YGGT family proteinC.G.S.X.
0.031e+034Triticum aestivumTa.4720.2.S1_atBJ271437--7e-1At2g41225unknown proteinC.G.S.X.
0.032e+032Vitis vinifera1617411_atBQ797398hypothetical protein LOC100244514-2e-2At5g57150basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.022e+032Zea maysZm.8287.1.A1_atAI737226hypothetical protein LOC100192745-5e+0At5g65740protein binding / zinc ion bindingC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage