Gene omics information

Query gene ID At3g07420
Gene name NS2
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g07420819930NS2Encodes an asparaginyl-tRNA synthetase.S.X.H.G.
1.00100.0At4g37445829899-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9998.1At1g05770837085jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9998.1At1g61760842473harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.9998.1At2g27140817256heat shock family proteinF:molecular_function unknown;P:response to heat;C:membrane;PBOMS.X.H.G.
0.9998.1At4g12580826871unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBS.X.H.G.
0.9998.1At5g02140831881thaumatin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOVS.X.H.G.
0.9998.1At5g61280836249remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBFS.X.H.G.
0.9998.1At1g05760837084RTM1 (restricted tev movement 1)Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistanceS.X.H.G.
0.9998.1At1g73370843672SUS6 (SUCROSE SYNTHASE 6)Encodes a protein with sucrose synthase activity (SUS6).S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
2587.9100.0GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
650.5100.0GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
648.0100.0GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
508.9100.0GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
398.5100.0GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
165.9100.0GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
11.499.3GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
8.799.0GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
7.598.8GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
7.498.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At5g07810830674SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinF:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVAC.G.S.X.
0.016e-240At4g09180826499basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOC.G.S.X.
0.016e-240At2g21550816694bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putativeF:thymidylate synthase activity, dihydrofolate reductase activity;P:glycine biosynthetic process, one-carbon compound metabolic process, nucleotide biosynthetic process, dTMP biosynthetic process;C:unknown;BOMFVPAC.G.S.X.
0.012e-138At5g04290830308KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1)F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAC.G.S.X.
0.011e+036At5g43530834373SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 8 functions;P:unknown;C:chloroplast envelope;MBOFPVAC.G.S.X.
0.011e+036At5g17760831644AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:plasma membrane;BOMFPAVC.G.S.X.
0.011e+036At5g26080832677proline-rich family proteinF:unknown;P:unknown;C:endomembrane system;MPBOFVAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.029e-240Glycine maxGma.3187.1.S1_atBG508905--2e-4At1g15710prephenate dehydrogenase family proteinC.G.S.X.
0.025e-136Hordeum vulgareHF21N04r_atHF21N04r--2e+0At4g19150ankyrin repeat family proteinC.G.S.X.
0.021e-140Oryza sativaOs01g0372700AK101893.1-Asparaginyl-tRNA synthetase, cytoplasmic 1 (EC6.1.1.22) (Asparagine-- tRNA ligase 1) (AsnRS 1)1e-15At1g70980SYNC3C.G.S.X.
0.025e-344Populus trichocarpaPtpAffx.147393.1.A1_atCV239268--1e-2At1g18170immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinC.G.S.X.
0.026e-240Triticum aestivumTaAffx.31234.1.S1_atCA619596--2e-2At2g20613unknown proteinC.G.S.X.
0.011e+034Vitis vinifera1616129_atCA810707--3e+0At1g59700ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)C.G.S.X.
0.013e-240Zea maysZm.2327.1.A1_atCK827198hypothetical protein LOC100276253-2e-6At5g11600unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006421The process of coupling asparagine to asparaginyl-tRNA, catalyzed by asparaginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00067Link to KaPPA-View 4tRNA-charging-pathway



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00970Link to KEGG PATHWAYAminoacyl-tRNA biosynthesis
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage