Gene omics information

Query gene ID At3g07250
Gene name nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7083.5At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBS.X.H.G.
0.7788.0At1g10890837632unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAS.X.H.G.
0.7486.1At5g46310834674WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;FPS.X.H.G.
0.7486.1At4g17130---S.X.H.G.
0.7385.5At5g62160836336AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)member of Fe(II) transporter isolog familyS.X.H.G.
0.7184.2At3g14320820652zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBS.X.H.G.
0.7083.5At3g58860825055F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7083.5At1g49260841350-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6982.9At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBS.X.H.G.
0.6982.9At4g05620825934F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
214.5100.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
152.899.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
150.899.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
145.799.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
145.599.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
132.599.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
131.999.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
128.799.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
113.499.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
113.399.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.025e-757At5g48650834922nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBAC.G.S.X.
0.011e-140At2g38500818432-F:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.011e-140At2g19080816425metaxin-relatedF:molecular_function unknown;P:protein targeting to mitochondrion;C:mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, plastid;MBPFOC.G.S.X.
0.015e-138At5g10350830899polyadenylate-binding protein family protein / PABP family proteinF:protein binding, RNA binding, poly(A) binding;P:biological_process unknown;C:plasma membrane;MFPOBAC.G.S.X.
0.015e-138At4g08160826365glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinEncodes a putative glycosyl hydrolase family 10 protein (xylanase).C.G.S.X.
0.015e-138At4g08810826452SUB1Calcium binding protein involved in cryptochrome and phytochrome coactionC.G.S.X.
0.015e-138At2g17520816258IRE1AEncodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.017e-138Glycine maxHgAffx.19984.1.S1_atCA939196--6e-2At5g20110dynein light chain, putativeC.G.S.X.
0.016e-240Hordeum vulgareContig25736_atContig25736--1e+0At2g46690auxin-responsive family proteinC.G.S.X.
0.012e-244Oryza sativaOsAffx.29272.2.S1_x_at---0C.G.S.X.
0.017e-138Populus trichocarpaPtpAffx.223111.1.S1_atpmrna40937hypothetical protein-7e-10At5g60980nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.015e-138Triticum aestivumTa.13610.2.S1_atBJ223726--1e-2At2g40970myb family transcription factorC.G.S.X.
0.011e-138Vitis vinifera1619034_atCK136955.1hypothetical protein LOC100264301-1e-3At4g15393CYP702A5C.G.S.X.
0.013e+034Zea maysZm.8915.2.S1_a_atCD526531UDP-sugar pyrophospharylase-3e-1Atmg00370-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006913The directed movement of molecules between the nucleus and the cytoplasm.
LGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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