CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g07220

Gene name transcriptional activator, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g07220 819910 transcriptional activator, putative F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;FMPO S.X. H.G.
0.43 55.3 At1g27650 839657 ATU2AF35A U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. S.X. H.G.
0.39 48.4 At2g42400 818841 VOZ2 (VASCULAR PLANT ONE ZINC FINGER PROTEIN 2) F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.31 33.8 At1g05890 837099 zinc finger protein-related F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPV S.X. H.G.
0.27 26.2 At3g22440 821815 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB S.X. H.G.
0.26 24.4 At1g02100 837541 leucine carboxyl methyltransferase family protein F:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;FMOP S.X. H.G.
0.26 24.4 At5g42820 834293 U2AF35B U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. S.X. H.G.
0.25 22.6 At1g43700 840957 VIP1 (VIRE2-INTERACTING PROTEIN 1) Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half. S.X. H.G.
0.25 22.6 At3g09880 820146 ATB' BETA Encodes B' regulatory subunit of PP2A (AtB'beta). S.X. H.G.
0.23 19.3 At3g13460 820548 ECT2 Physically interacts with CIPK1. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
64.4 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
63.4 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.4 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
58.1 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
55.5 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
54.0 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.8 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.9 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
49.1 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 4e-168 591 At3g07260 819914 forkhead-associated domain-containing protein / FHA domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOB C.G. S.X.
0.01 5e-1 36 At4g37890 829945 EDA40 (embryo sac development arrest 40) F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:polar nucleus fusion;C:plasma membrane;PBOFM C.G. S.X.
0.01 5e-1 36 At1g78930 844232 mitochondrial transcription termination factor-related / mTERF-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO C.G. S.X.
0.01 5e-1 36 At1g80460 844385 NHO1 (nonhost resistance to P. s. phaseolicola 1) Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1. C.G. S.X.
0.02 2e+0 34 At5g39820 833978 anac094 (Arabidopsis NAC domain containing protein 94) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POM C.G. S.X.
0.02 2e+0 34 At5g23040 832368 CDF1 (CELL GROWTH DEFECT FACTOR 1) Cell growth defect factor 1.Causes Bax mediated lethality in yeast by generating reactive oxygen species and this effect is suppressed by AtBI-1. C.G. S.X.
0.02 2e+0 34 At3g56920 824859 zinc finger (DHHC type) family protein F:zinc ion binding;P:unknown;C:unknown;MOFP C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 8e-19 95 Glycine max Gma.11950.3.S1_at BE346131 - - 6e-15 At3g07260 forkhead-associated domain-containing protein / FHA domain-containing protein C.G. S.X.
0.06 6e-8 57 Hordeum vulgare Contig14541_at Contig14541 - - 1e-7 At3g07220 transcriptional activator, putative C.G. S.X.
0.12 3e-13 77 Oryza sativa Os08g0528900 AK065800.1 - Transcriptional activator FHA1 4e-18 At3g07260 forkhead-associated domain-containing protein / FHA domain-containing protein C.G. S.X.
0.35 9e-25 115 Populus trichocarpa PtpAffx.149416.1.S1_at CN524567 hypothetical protein - 5e-25 At3g07220 transcriptional activator, putative C.G. S.X.
0.18 3e-8 59 Triticum aestivum Ta.7540.3.S1_a_at CK205921 - - 2e-8 At3g07220 transcriptional activator, putative C.G. S.X.
0.09 1e-8 59 Vitis vinifera 1617406_s_at CF415339 hypothetical protein LOC100266010 - 2e-8 At3g07220 transcriptional activator, putative C.G. S.X.
0.13 3e-6 52 Zea mays Zm.19203.1.S1_at CO520849 hypothetical protein LOC100193957 - 1e-5 At3g07220 transcriptional activator, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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