CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g07100

Gene name protein transport protein Sec24, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g07100 819896 protein transport protein Sec24, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVA S.X. H.G.
0.67 81.6 At1g21630 838765 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVA S.X. H.G.
0.67 81.6 At4g32640 829399 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:intracellular protein transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOBPVA S.X. H.G.
0.57 73.8 At1g04140 839272 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:chloroplast;MBFOPA S.X. H.G.
0.57 73.8 At3g08850 820032 RAPTOR1 Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive. S.X. H.G.
0.52 67.4 At2g05170 815065 ATVPS11 Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. S.X. H.G.
0.50 65.3 At3g10380 820201 SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) Subunit of the Putative Arabidopsis Exocyst Complex S.X. H.G.
0.42 53.9 At4g14160 827055 transport protein, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP S.X. H.G.
0.33 38.1 At3g50590 824223 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.9 99.6 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
15.1 99.4 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
15.0 99.4 GSM142642 MC002_ATH1_A7.2-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.7 99.4 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.6 99.4 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.6 99.4 GSM142648 MC002_ATH1_A9.2-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.5 99.4 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.4 99.4 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.2 99.4 GSM142643 MC002_ATH1_A7.3-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.2 99.3 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 40 At2g45430 819151 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMFBO C.G. S.X.
0.01 4e-1 38 At5g52240 835300 MSBP1 (membrane steroid binding protein 1) Encodes a protein with similarity to progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark. C.G. S.X.
0.01 4e-1 38 At3g07660 819957 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 2e+0 36 At5g55500 835643 XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE) Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions. C.G. S.X.
0.01 2e+0 36 At5g22740 832337 ATCSLA02 encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein C.G. S.X.
0.01 2e+0 36 At3g50010 824163 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 2e+0 36 At1g20840 838676 TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1) The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues. C.G. S.X.
0.01 6e+0 34 At5g01770 831681 RAPTOR2 (RAPTOR2) Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutations in this gene have no visible effects on embryo or plant development. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 1e-35 153 Glycine max GmaAffx.76737.1.S1_at BF324681 - - 4e-36 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.11 6e-20 99 Hordeum vulgare Contig4175_at Contig4175 - - 1e-19 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.14 1e-30 137 Oryza sativa Os04g0129500 AK071986.1 - Sec23/Sec24 zinc finger domain containing protein 7e-31 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.39 3e-73 278 Populus trichocarpa PtpAffx.207677.1.S1_s_at pmrna15246 hypothetical protein - 2e-73 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.10 1e-19 99 Triticum aestivum TaAffx.6598.1.S1_at CD938071 - - 1e-19 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.04 5e-10 65 Vitis vinifera 1614608_at CF212155 similar to protein transport protein Sec24, putative - 4e-10 At3g07100 protein transport protein Sec24, putative C.G. S.X.
0.09 3e-21 103 Zea mays Zm.6026.1.S1_at CA405322 hypothetical protein LOC100194158 - 7e-21 At3g07100 protein transport protein Sec24, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
L GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
L GO:0006888 The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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