Gene omics information

Query gene ID At3g07010
Gene name pectate lyase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4457.2At3g07010819886pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOS.X.H.G.
0.4862.5At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOS.X.H.G.
0.4659.8At2g42900818891-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMS.X.H.G.
0.4050.8At3g12610820441DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100)Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.S.X.H.G.
0.2624.4At1g52190841649proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMFOS.X.H.G.
0.2014.4At1g11545837698xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOS.X.H.G.
0.146.8At4g14750827130IQD19 (IQ-domain 19)F:calmodulin binding;P:unknown;C:unknown;PMOFBVAS.X.H.G.
0.135.8At3g02170821279LNG2 (LONGIFOLIA2)Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function.S.X.H.G.
0.040.9At3g20820821630leucine-rich repeat family proteinF:protein binding;P:signal transduction, defense response;C:apoplast, cell wall, chloroplast, membrane;PMOBFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
58.399.8E-MEXP-1474-raw-cel-1593932673
52.399.8E-MEXP-1474-raw-cel-1593932705
37.199.7E-MEXP-1474-raw-cel-1593932513
35.599.7GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
35.399.7E-MEXP-1474-raw-cel-1593932481
31.599.7GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
28.799.7GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
27.299.7GSM226536L6SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
26.599.7GSM134514Col-0_4day_dark_-lincomycin_rep2GSE5759red illumination w/o lincomycin
25.599.7GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.750724At5g48900834948pectate lyase family proteinF:lyase activity, pectate lyase activity;P:unknown;C:endomembrane system;PBFOC.G.S.X.
0.592e-90333At3g24670822063pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.421e-88327At4g13210826936lyase/ pectate lyaseF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;PBFOC.G.S.X.
0.302e-56220At4g13710827005pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.442e-50200At1g04680839452pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOC.G.S.X.
0.272e-37157At3g24230822010pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOC.G.S.X.
0.276e-32139At1g67750843100pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOC.G.S.X.
0.179e-31135At5g63180836439pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;BPFOC.G.S.X.
0.259e-28125At4g24780828580pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.261e-30135Glycine maxGma.2210.1.S1_atAW309542--1e-67At5g48900pectate lyase family proteinC.G.S.X.
0.251e-22107Hordeum vulgareContig11004_atContig11004--3e-22At3g07010pectate lyase family proteinC.G.S.X.
0.161e-28129Oryza sativaOs04g0137100AK060609.1-Pectate lyase (Fragment)8e-6At3g07010pectate lyase family proteinC.G.S.X.
0.407e-54212Populus trichocarpaPtpAffx.202640.1.S1_atpmrna5277hypothetical protein-2e-77At4g13710pectate lyase family proteinC.G.S.X.
0.185e-1479Triticum aestivumTa.11160.1.S1_s_atBQ169530--5e-14At3g07010pectate lyase family proteinC.G.S.X.
0.273e-62238Vitis vinifera1618576_atBQ800615pectate lyase PL1-like-4e-124At4g13710pectate lyase family proteinC.G.S.X.
0.158e-1167Zea maysZmAffx.854.1.S1_atAI770665hypothetical protein LOC100273705-5e-8At4g24780pectate lyase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00421Link to KaPPA-View 4Polysaccharide lyases



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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