Gene omics information

Query gene ID At3g06870
Gene name proline-rich family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6680.1At3g06870819871proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVBS.X.H.G.
0.7184.2At3g58860825055F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7083.5At1g10890837632unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVAS.X.H.G.
0.7083.5At5g62160836336AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)member of Fe(II) transporter isolog familyS.X.H.G.
0.6982.9At3g14320820652zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBS.X.H.G.
0.6882.2At4g17130---S.X.H.G.
0.6882.2At5g46310834674WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;FPS.X.H.G.
0.6781.6At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBS.X.H.G.
0.6579.6At1g49260841350-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6579.6At2g06960815265oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PBOFMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
246.8100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
222.4100.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
137.999.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
137.199.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
133.499.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
128.399.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
120.499.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
113.999.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
113.099.9GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.099.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.400696At3g068686241205unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVC.G.S.X.
0.133e-41169At5g49100834969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPVC.G.S.X.
0.032e-240At4g046143770064unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPVBC.G.S.X.
0.032e-240At2g04850815031auxin-responsive protein-relatedF:unknown;P:unknown;C:membrane;PMFOBC.G.S.X.
0.028e-238At4g28790829000basic helix-loop-helix (bHLH) family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;PMFBOC.G.S.X.
0.018e-238At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)C.G.S.X.
0.028e-238At3g20015821540aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOC.G.S.X.
0.028e-238At2g44020819007mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.123e-1789Glycine maxGmaAffx.58662.1.S1_atAW755793--2e-17At3g06870proline-rich family proteinC.G.S.X.
0.032e-136Hordeum vulgareContig972_x_atContig972--2e+0At1g10840TIF3H1C.G.S.X.
0.034e-240Oryza sativaOs10g0557600NM_197709.1-AtGATA-3 protein (GATA transcription factor 3)3e-21At4g32890zinc finger (GATA type) family proteinC.G.S.X.
0.089e-24111Populus trichocarpaPtpAffx.224622.1.S1_atpmrna43332hypothetical protein-3e-24At5g49100unknown proteinC.G.S.X.
0.063e-136Triticum aestivumTa.26103.1.A1_atCD452685--4e-1At3g06870proline-rich family proteinC.G.S.X.
0.044e-134Vitis vinifera1622562_atCD006619--7e-40At1g79510unknown proteinC.G.S.X.
0.055e-134Zea maysZm.17055.1.S1_atCF972499--2e-2At1g12665-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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