Gene omics information

Query gene ID At3g06670
Gene name binding
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g06670819852bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVS.X.H.G.
0.8693.1At1g54490841891XRN4 (EXORIBONUCLEASE 4)Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.S.X.H.G.
0.5773.8At4g05420825890DDB1A (DAMAGED DNA BINDING PROTEIN 1A)Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.S.X.H.G.
0.5065.3At2g25760817118protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAS.X.H.G.
0.3643.6At3g22170821781FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
35.799.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
33.599.7GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
26.999.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.157e-27123At5g49370834997-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.144e-25117At5g49390834999-F:unknown;P:unknown;C:endomembrane system;MOFBPVC.G.S.X.
0.182e-21105At5g49380834998-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPC.G.S.X.
0.018e-240At4g38590830016glycosyl hydrolase family 35 proteinputative beta-galactosidase (BGAL14 gene)C.G.S.X.
0.018e-240At3g63400825515peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, RNA splicing;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.018e-240At2g03230814852-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.013e-138At5g67260836861CYCD3Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.C.G.S.X.
0.013e-138At5g08230830719PWWP domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.013e-138At4g36890829842IRX14 (irregular xylem 14)The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-656Glycine maxGma.16233.1.S1_atBE659138--7e-7At3g06670bindingC.G.S.X.
0.011e-242Hordeum vulgareContig20621_atContig20621--2e-3At4g27320universal stress protein (USP) family proteinC.G.S.X.
0.063e-656Oryza sativaOs01g0337600AK119468.1-Protein of unknown function DUF625 domaincontaining protein8e-4At3g06670bindingC.G.S.X.
0.152e-1895Populus trichocarpaPtpAffx.50509.1.A1_atCV242668hypothetical protein-5e-19At3g06670bindingC.G.S.X.
0.022e-552Triticum aestivumTa.7283.1.S1_atBJ218954--1e-2At5g19070-C.G.S.X.
0.252e-61236Vitis vinifera1615366_atCD719694--2e-61At3g06670bindingC.G.S.X.
0.021e-138Zea maysZm.6246.2.A1_atAI677558--9e-7At2g22080unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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