CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g06670

Gene name binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g06670 819852 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.86 93.1 At1g54490 841891 XRN4 (EXORIBONUCLEASE 4) Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing. S.X. H.G.
0.57 73.8 At4g05420 825890 DDB1A (DAMAGED DNA BINDING PROTEIN 1A) Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. S.X. H.G.
0.50 65.3 At2g25760 817118 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA S.X. H.G.
0.36 43.6 At3g22170 821781 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.7 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.5 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
26.9 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.6 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.5 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.7 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.4 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
23.7 99.6 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.5 99.6 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.2 99.6 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 7e-27 123 At5g49370 834997 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.14 4e-25 117 At5g49390 834999 - F:unknown;P:unknown;C:endomembrane system;MOFBPV C.G. S.X.
0.18 2e-21 105 At5g49380 834998 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.01 8e-2 40 At4g38590 830016 glycosyl hydrolase family 35 protein putative beta-galactosidase (BGAL14 gene) C.G. S.X.
0.01 8e-2 40 At3g63400 825515 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, RNA splicing;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 8e-2 40 At2g03230 814852 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.01 3e-1 38 At5g67260 836861 CYCD3 Encode CYCD3;2, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development. C.G. S.X.
0.01 3e-1 38 At5g08230 830719 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 3e-1 38 At4g36890 829842 IRX14 (irregular xylem 14) The IRX14 gene encodes a putative family 43 glycosyl transferase that contributes to xylan biosynthesis. It was identified based on its gene expression co-variance with the IRX3 gene involved in secondary cell wall synthesis. A biochemical assay using the irx14 mutant indicates that IRX14 might function in xylose chain elongation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-6 56 Glycine max Gma.16233.1.S1_at BE659138 - - 7e-7 At3g06670 binding C.G. S.X.
0.01 1e-2 42 Hordeum vulgare Contig20621_at Contig20621 - - 2e-3 At4g27320 universal stress protein (USP) family protein C.G. S.X.
0.06 3e-6 56 Oryza sativa Os01g0337600 AK119468.1 - Protein of unknown function DUF625 domaincontaining protein 8e-4 At3g06670 binding C.G. S.X.
0.15 2e-18 95 Populus trichocarpa PtpAffx.50509.1.A1_at CV242668 hypothetical protein - 5e-19 At3g06670 binding C.G. S.X.
0.02 2e-5 52 Triticum aestivum Ta.7283.1.S1_at BJ218954 - - 1e-2 At5g19070 - C.G. S.X.
0.25 2e-61 236 Vitis vinifera 1615366_at CD719694 - - 2e-61 At3g06670 binding C.G. S.X.
0.02 1e-1 38 Zea mays Zm.6246.2.A1_at AI677558 - - 9e-7 At2g22080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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