Gene omics information

Query gene ID At3g06530
Gene name binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6579.6At3g06530819831bindingF:binding;P:unknown;C:chloroplast, vacuole;MFOPBS.X.H.G.
0.7184.2At3g21540821708transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBAS.X.H.G.
0.6579.6At4g04940825833transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPAS.X.H.G.
0.6579.6At2g40700818665DEAD/DEAH box helicase, putative (RH17)F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAVS.X.H.G.
0.6378.1At3g11964820370RNA bindingF:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPAS.X.H.G.
0.6378.1At3g09720820129DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.6176.7At3g18600821391DEAD/DEAH box helicase, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAVS.X.H.G.
0.6176.7At5g06550830543-F:molecular_function unknown;P:cell surface receptor linked signal transduction;C:unknown;MBOFPS.X.H.G.
0.5873.8At4g28450828962nucleotide binding / protein bindingThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseS.X.H.G.
0.5267.4At5g14050831254transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
71.099.9E-MEXP-849-raw-cel-1181981046
57.399.8GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
46.099.8E-MEXP-849-raw-cel-1181981030
43.099.8E-MEXP-849-raw-cel-1181981006
41.599.8E-MEXP-849-raw-cel-1181981014
36.699.7E-MEXP-849-raw-cel-1181981022
33.799.7E-MEXP-849-raw-cel-1181981038
33.499.7E-MEXP-849-raw-cel-1181980998
25.299.6E-MEXP-849-raw-cel-1181980982
23.699.6GSM133308RIKEN-NAKABAYASHI4AGSE5700AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-448At5g65630836689GTE7 (Global transcription factor group E 7)This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE7 show some resistance to agrobacterium-mediated root transformation.C.G.S.X.
0.012e-140At3g51150824279kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOPFBVC.G.S.X.
0.017e-138At5g56210835720WIP2 (WPP-domain Interacting Protein 2)F:protein heterodimerization activity, protein homodimerization activity;P:biological_process unknown;C:nuclear envelope, cell plate;MOFBPAVC.G.S.X.
0.007e-138At3g24870822085DNA bindingF:DNA binding;P:unknown;C:apoplast;MOFPBVAC.G.S.X.
0.017e-138At3g06020819773unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBAC.G.S.X.
0.007e-138At2g27980817342protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOBC.G.S.X.
0.017e-138At2g20590816582reticulon family proteinF:unknown;P:biological_process unknown;C:endoplasmic reticulum, chloroplast;MPOFBC.G.S.X.
0.007e-138At1g05670837074UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMOFBVAC.G.S.X.
0.017e-138At1g600808423033' exoribonuclease family domain 1-containing proteinF:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MAOFPBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e-244Glycine maxGmaAffx.21217.2.S1_s_atAI748710--2e-5At3g15260protein phosphatase 2C, putative / PP2C, putativeC.G.S.X.
0.013e-138Hordeum vulgareContig15894_atContig15894--3e-5At5g08710regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-relatedC.G.S.X.
0.019e-242Oryza sativaOsAffx.24749.1.S1_at---0C.G.S.X.
0.054e-346Populus trichocarpaPtpAffx.219372.1.S1_atpmrna35276--3e-3At3g06530bindingC.G.S.X.
0.013e+036Triticum aestivumTa.10734.1.A1_atBQ166432--7e-2At5g09230SRT2 (SIRTUIN 2)C.G.S.X.
0.018e-136Vitis vinifera1617443_atCD013741--3e-9At5g06790unknown proteinC.G.S.X.
0.011e+036Zea maysZm.12684.1.A1_atAY103902.1--2e-2At5g55660-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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