Gene omics information

Query gene ID At3g06510
Gene name SFR2 (SENSITIVE TO FREEZING 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g06510819829SFR2 (SENSITIVE TO FREEZING 2)Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezingS.X.H.G.
0.6478.9At4g04770825814ATABC1 (ATP BINDING CASSETTE PROTEIN 1)Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast.S.X.H.G.
0.6075.7At3g63520825527CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds.S.X.H.G.
0.5974.7At2g23390816871-F:molecular_function unknown;P:biological_process unknown;C:unknown;OBPS.X.H.G.
0.5873.8At1g73170843649ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidaseF:nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding;P:proteolysis;C:chloroplast;BOPMAFS.X.H.G.
0.5873.8At5g52030835278TraB protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAPS.X.H.G.
0.5773.8At2g21340816673antiporter/ drug transporterF:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast;BOPAFMS.X.H.G.
0.5773.8At5g49970835061ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)encodes the bifunctional pyridoxine (pyridoxamine) 5-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group)S.X.H.G.
0.5673.0At1g54350841876ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast;BOMFAPVS.X.H.G.
0.5570.6At3g10970820268haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPAMFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
14.299.4GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
14.099.4GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.199.3GSM131304AtGen_6-2612_Osmoticstress-Shoots-24.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
11.399.3GSM133819Yang_1-4_old-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
10.199.2GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.899.1GSM269833T8 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.899.1GSM133821Yang_1-6_old-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
9.699.1GSM7717504h low CO2 + light replicate AGSE3423Carbon fixation (endogenous sugar) and light-dependent gene expression
9.699.1GSM269832T8 leaf-well watered-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.099.1GSM269829WT leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At5g45560834592pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing proteinF:lipid binding;P:unknown;C:mitochondrion;PMOC.G.S.X.
0.012e-138At2g21800816716ATEME1A (ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1A)Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.C.G.S.X.
0.019e-136At5g61250836246AtGUS1 (Arabidopsis thaliana glucuronidase 1)Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted.C.G.S.X.
0.019e-136At3g28230822449-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBC.G.S.X.
0.019e-136At3g30770822832ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingF:aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:translation, tRNA aminoacylation for protein translation;C:cytoplasm;PMC.G.S.X.
0.029e-136At3g32930823057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.161e-1379Glycine maxGma.16762.1.S1_atBU546275beta-glycosidase-like-5e-14At3g06510SFR2 (SENSITIVE TO FREEZING 2)C.G.S.X.
0.022e+034Hordeum vulgareHVSMEb0011P05r2_x_atHVSMEb0011P05r2--3e+0At4g05130equilibrative nucleoside transporter, putative (ENT4)C.G.S.X.
0.108e-963Oryza sativaOs11g0683500AK067619.1-Glycoside hydrolase, family 1 protein6e-9At3g06510SFR2 (SENSITIVE TO FREEZING 2)C.G.S.X.
0.074e-1997Populus trichocarpaPtp.6062.1.S1_atDN487045hypothetical protein-2e-19At3g06510SFR2 (SENSITIVE TO FREEZING 2)C.G.S.X.
0.052e-1171Triticum aestivumTa.30449.1.A1_atCK206731--8e-12At3g06510SFR2 (SENSITIVE TO FREEZING 2)C.G.S.X.
0.235e-43174Vitis vinifera1609579_atCF203035.1hypothetical protein LOC100241487-6e-43At3g06510SFR2 (SENSITIVE TO FREEZING 2)C.G.S.X.
0.014e-136Zea maysZm.908.1.A1_atAW066952--3e-1At1g55810uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0050826A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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