Gene omics information

Query gene ID At3g06260
Gene name GATL4 (Galacturonosyltransferase-like 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g06260819800GATL4 (Galacturonosyltransferase-like 4)Encodes a protein with putative galacturonosyltransferase activity.S.X.H.G.
0.9597.0At5g12000831073kinaseF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAS.X.H.G.
0.8693.1At2g07040815274PRK2APollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth.S.X.H.G.
0.8190.4At3g17060820963pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMS.X.H.G.
0.8190.4At1g04540839498C2 domain-containing proteinF:unknown;P:biological_process unknown;C:membrane;PMOFBS.X.H.G.
0.7989.1At2g33420817906-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.7687.4At3g19310821465phospholipase C/ phosphoric diester hydrolaseF:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBMS.X.H.G.
0.7687.4At5g58170835929SVL5 (SHV3-LIKE 5)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMFS.X.H.G.
0.7687.4At1g25240839107epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedF:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat, mitochondrion;PMFBAOS.X.H.G.
0.7687.4At3g20580821605COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
188.0100.0GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
186.1100.0GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
163.299.9GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
161.499.9GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
151.299.9E-MEXP-285-raw-cel-440782725
147.899.9GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
140.199.9E-MEXP-285-raw-cel-440782791
132.599.9GSM154506Arabidopsis hydrated pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
126.199.9GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
125.299.9GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.079e-961At1g19300838512PARVUS (PARVUS)The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.C.G.S.X.
0.199e-652At1g13250837885GATL3 (Galacturonosyltransferase-like 3)Encodes a protein with putative galacturonosyltransferase activity.C.G.S.X.
0.075e-446At3g28340822462GATL10 (Galacturonosyltransferase-like 10)Encodes a protein with putative galacturonosyltransferase activity.C.G.S.X.
0.085e-446At1g70090843345LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)Encodes a protein with putative galacturonosyltransferase activity.C.G.S.X.
0.052e-344At3g62660825440GATL7 (Galacturonosyltransferase-like 7)Encodes a protein with putative galacturonosyltransferase activity.C.G.S.X.
0.098e-342At3g50760824240GATL2 (Galacturonosyltransferase-like 2)Encodes a protein with putative galacturonosyltransferase activity.C.G.S.X.
0.021e-138At3g60980825270pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:response to oxidative stress;C:unknown;POC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.098e-446Glycine maxGmaAffx.86863.2.S1_atBQ610828--3e-13At1g70090LGT8 (GLUCOSYL TRANSFERASE FAMILY 8)C.G.S.X.
0.033e-136Hordeum vulgareHS09M06u_atHS09M06u--1e+0At3g48450nitrate-responsive NOI protein, putativeC.G.S.X.
0.041e-346Oryza sativaOs03g0359600AK072250.1-Avr9/Cf-9 rapidly elicited protein 2316e-5At1g13250GATL3 (Galacturonosyltransferase-like 3)C.G.S.X.
0.413e-1273Populus trichocarpaPtpAffx.207542.1.S1_atpmrna14966glycosyltransferase, CAZy family GT8-2e-12At3g06260GATL4 (Galacturonosyltransferase-like 4)C.G.S.X.
0.064e-240Triticum aestivumTaAffx.12563.1.A1_atBJ254471--1e-3At1g13250GATL3 (Galacturonosyltransferase-like 3)C.G.S.X.
0.041e-240Vitis vinifera1616007_atCB002013hypothetical protein LOC100264254-3e-15At1g19300PARVUS (PARVUS)C.G.S.X.
0.034e+032Zea maysZmAffx.549.1.S1_atAI712143--3e+0At1g22067unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0016051The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00359Link to KaPPA-View 4Glucosyltransferase
00437Link to KaPPA-View 4Xyloglucan biosynthesis and modification



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage