CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g06220

Gene name DNA binding / transcription factor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At3g06220 819796 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF S.X. H.G.
0.67 81.6 At2g42200 818820 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. S.X. H.G.
0.55 70.6 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA S.X. H.G.
0.35 41.6 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
78.7 99.9 GSM10441 WT Ovule 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
76.3 99.9 GSM131670 ATGE_48_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
74.1 99.9 GSM10442 WT Ovule 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
68.3 99.9 GSM131672 ATGE_48_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
63.2 99.8 GSM131662 ATGE_29_B2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
59.4 99.8 GSM131663 ATGE_29_C2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
59.0 99.8 GSM131671 ATGE_48_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
58.7 99.8 GSM131661 ATGE_29_A2 GSE5633 AtGenExpress: Developmental series (shoots and stems)
57.9 99.8 GSM131674 ATGE_49_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
57.8 99.8 E-MEXP-682-raw-cel-922397679
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 4e-80 297 At3g06160 819790 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO C.G. S.X.
0.05 2e-2 40 Atmg00450 - - hypothetical protein C.G. S.X.
0.03 3e-1 36 At1g78200 844156 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVA C.G. S.X.
0.01 1e+0 34 At5g59900 836112 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.02 1e+0 34 At5g13970 831245 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVA C.G. S.X.
0.02 1e+0 34 At3g47600 823914 ATMYB94 (MYB DOMAIN PROTEIN 94) Encodes a putative transcription factor (MYB94). C.G. S.X.
0.01 1e+0 34 At2g36370 818210 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPFOBV C.G. S.X.
0.01 1e+0 34 At1g56290 842082 CwfJ-like family protein F:unknown;P:unknown;C:cellular_component unknown;MOFPBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max GmaAffx.78366.2.S1_at BM891171 - - 8e-1 At5g03230 unknown protein C.G. S.X.
0.04 8e+0 30 Hordeum vulgare HVSMEf0013N13r2_at HVSMEf0013N13r2 - - 5e-1 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.9149.1.S1_at - - - 0 C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.215864.1.S1_at pmrna30297 hypothetical protein - 7e-1 At3g06220 DNA binding / transcription factor C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.502.2.S1_x_at BE591704 - - 1e+0 At3g06220 DNA binding / transcription factor C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1612442_at BQ798338 - - 4e+0 Atmg00890 - C.G. S.X.
0.03 7e+0 30 Zea mays ZmAffx.824.1.A1_at AI770504 - - 3e+0 At5g20370 serine-rich protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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