Gene omics information

Query gene ID At3g06220
Gene name DNA binding / transcription factor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8089.8At3g06220819796DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PS.X.H.G.
0.8994.6At4g30130829136unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFS.X.H.G.
0.6781.6At2g42200818820SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.S.X.H.G.
0.5570.6At2g42800818880AtRLP29 (Receptor Like Protein 29)F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFAS.X.H.G.
0.3541.6At2g32765817837SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
78.799.9GSM10441WT Ovule 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
76.399.9GSM131670ATGE_48_AGSE5633AtGenExpress: Developmental series (shoots and stems)
74.199.9GSM10442WT Ovule 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
68.399.9GSM131672ATGE_48_CGSE5633AtGenExpress: Developmental series (shoots and stems)
63.299.8GSM131662ATGE_29_B2GSE5633AtGenExpress: Developmental series (shoots and stems)
59.499.8GSM131663ATGE_29_C2GSE5633AtGenExpress: Developmental series (shoots and stems)
59.099.8GSM131671ATGE_48_BGSE5633AtGenExpress: Developmental series (shoots and stems)
58.799.8GSM131661ATGE_29_A2GSE5633AtGenExpress: Developmental series (shoots and stems)
57.999.8GSM131674ATGE_49_BGSE5633AtGenExpress: Developmental series (shoots and stems)
57.899.8E-MEXP-682-raw-cel-922397679
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.424e-80297At3g06160819790transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POC.G.S.X.
0.052e-240Atmg00450--hypothetical proteinC.G.S.X.
0.033e-136At1g78200844156protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVAC.G.S.X.
0.011e+034At5g59900836112pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.021e+034At5g13970831245unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVAC.G.S.X.
0.021e+034At3g47600823914ATMYB94 (MYB DOMAIN PROTEIN 94)Encodes a putative transcription factor (MYB94).C.G.S.X.
0.011e+034At2g36370818210ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPFOBVC.G.S.X.
0.011e+034At1g56290842082CwfJ-like family proteinF:unknown;P:unknown;C:cellular_component unknown;MOFPBAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e+034Glycine maxGmaAffx.78366.2.S1_atBM891171--8e-1At5g03230unknown proteinC.G.S.X.
0.048e+030Hordeum vulgareHVSMEf0013N13r2_atHVSMEf0013N13r2--5e-1At5g2354026S proteasome regulatory subunit, putativeC.G.S.X.
0.042e+034Oryza sativaOsAffx.9149.1.S1_at---0C.G.S.X.
0.041e+034Populus trichocarpaPtpAffx.215864.1.S1_atpmrna30297hypothetical protein-7e-1At3g06220DNA binding / transcription factorC.G.S.X.
0.041e+034Triticum aestivumTa.502.2.S1_x_atBE591704--1e+0At3g06220DNA binding / transcription factorC.G.S.X.
0.031e+032Vitis vinifera1612442_atBQ798338--4e+0Atmg00890-C.G.S.X.
0.037e+030Zea maysZmAffx.824.1.A1_atAI770504--3e+0At5g20370serine-rich protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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