CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g06080

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At3g06080 819781 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.44 57.2 At2g30600 817610 BTB/POZ domain-containing protein F:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVF S.X. H.G.
0.42 53.9 At1g11260 837667 STP1 (SUGAR TRANSPORTER 1) Encodes a H+/hexose cotransporter. S.X. H.G.
0.40 50.8 At3g13750 820584 BGAL1 (Beta galactosidase 1) beta-galactosidase, glycosyl hydrolase family 35 S.X. H.G.
0.29 30.3 At1g70290 843365 ATTPS8 Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.9 99.8 GSM253159 4h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
33.7 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.9 99.7 GSM133400 Knight_2-3_sfr6-lt_Rep1_ATH1 GSE5710 Dark-induced gene expression in sfr6
26.6 99.7 GSM77180 04h low CO2 + dark replicate B GSE3423 Carbon fixation (endogenous sugar) and light-dependent gene expression
26.2 99.7 E-MEXP-1094-raw-cel-1379507433
25.8 99.7 GSM253158 4h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
23.7 99.6 GSM253160 6h into an extended night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
21.3 99.6 GSM253162 8h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
20.4 99.6 E-MEXP-1094-raw-cel-1379507473
19.2 99.6 E-MEXP-1094-raw-cel-1379507513
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 4e-51 202 At5g19160 832036 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 1e-1 38 At3g05670 819734 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MOFBPVA C.G. S.X.
0.01 1e-1 38 At2g33170 817878 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 1e-1 38 At2g27110 817253 FRS3 (FAR1-related sequence 3) F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFM C.G. S.X.
0.01 1e-1 38 At1g07520 837266 scarecrow transcription factor family protein F:transcription factor activity;P:response to chitin;C:cellular_component unknown;PBOM C.G. S.X.
0.02 5e-1 36 At5g06230 830510 unknown protein F:unknown;P:unknown;C:endomembrane system;PFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-8 61 Glycine max GmaAffx.38450.1.S1_at CA938013 - - 9e-7 At5g19160 unknown protein C.G. S.X.
0.03 3e-1 36 Hordeum vulgare HO14H22S_s_at HO14H22S - - 2e-1 At3g06080 unknown protein C.G. S.X.
0.06 7e-5 50 Oryza sativa Os12g0145400 AK063322.1 - Protein of unknown function DUF231 domaincontaining protein 2e-8 At5g19160 unknown protein C.G. S.X.
0.29 7e-35 149 Populus trichocarpa PtpAffx.208370.1.S1_at pmrna16644 hypothetical protein - 6e-35 At3g06080 unknown protein C.G. S.X.
0.03 6e-4 46 Triticum aestivum Ta.16847.1.S1_at CA613713 - - 2e-4 At3g06080 unknown protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1617845_at CD800649 hypothetical protein LOC100263968 - 4e-35 At2g38630 - C.G. S.X.
0.13 4e-12 71 Zea mays Zm.15314.1.S1_at CF972544 - - 1e-11 At3g06080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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