CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g05960

Gene name STP6 (SUGAR TRANSPORTER 6)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.91 95.6 At3g05960 819766 STP6 (SUGAR TRANSPORTER 6) Encodes a hexose sugar transporter that is expressed in pollen. STP6 may play a role in providing sugars during late pollen maturation or pollen tube germination. S.X. H.G.
0.98 97.8 At4g10440 826636 dehydration-responsive family protein F:unknown;P:unknown;C:unknown;PBOA S.X. H.G.
0.97 97.6 At1g72960 843627 root hair defective 3 GTP-binding (RHD3) family protein F:nucleotide binding;P:unknown;C:cellular_component unknown;OFPMB S.X. H.G.
0.97 97.6 At3g17720 821040 pyridoxal-dependent decarboxylase family protein F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity;P:amino acid metabolic process, carboxylic acid metabolic process, glutamate metabolic process;C:unknown;BFPAOM S.X. H.G.
0.97 97.6 At3g17630 821030 ATCHX19 (CATION/H+ EXCHANGER 19) member of Putative Na+/H+ antiporter family S.X. H.G.
0.96 97.3 At1g07850 837300 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation;C:chloroplast;MPFO S.X. H.G.
0.96 97.3 At2g16120 816109 mannitol transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV S.X. H.G.
0.96 97.3 At4g11030 826704 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV S.X. H.G.
0.96 97.3 At2g07560 815329 AHA6 (Arabidopsis H(+)-ATPase 6) F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAV S.X. H.G.
0.95 97.0 At4g25950 828701 VATG3 (vacuolar ATP synthase G3) V-ATPase G-subunit like protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
284.6 100.0 GSM106921 opr3_OPDA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
282.8 100.0 GSM106924 opr3_OPDA_2 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
277.5 100.0 GSM106825 opr3_0 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
238.8 100.0 GSM106966 opr3_OPDA_8 hrs_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
226.6 100.0 GSM106922 opr3_OPDA_2 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
225.6 100.0 GSM106919 opr3_OPDA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
224.6 100.0 GSM106908 opr3_JA_0.5 hr_Rep3 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
215.4 100.0 GSM106827 opr3_0 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
214.8 100.0 GSM106920 opr3_OPDA_0.5 hr_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
214.2 100.0 GSM106923 opr3_OPDA_2 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 0 660 At5g26250 832694 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:endomembrane system, integral to membrane, membrane;BFMPOA C.G. S.X.
0.04 3e-6 54 At4g21480 828233 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV C.G. S.X.
0.06 1e-5 52 At5g26340 832703 MSS1 Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD. C.G. S.X.
0.10 5e-5 50 At3g19940 821532 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA C.G. S.X.
0.06 5e-5 50 At1g07340 837245 ATSTP2 (SUGAR TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, monosaccharide transmembrane transporter activity;P:pollen development, monosaccharide transport;C:integral to plasma membrane, membrane;FBMPOA C.G. S.X.
0.04 1e-2 42 At1g50310 841453 STP9 (SUGAR TRANSPORTER 9) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA C.G. S.X.
0.06 5e-2 40 At5g23270 832391 STP11 (SUGAR TRANSPORTER 11) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA C.G. S.X.
0.03 5e-2 40 At5g61520 836273 hexose transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA C.G. S.X.
0.07 5e-2 40 At3g19930 821531 STP4 (SUGAR TRANSPORTER 4) Encodes a sucrose hydrogen symporter that is induced by wounding. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-6 54 Glycine max GmaAffx.60414.1.S1_x_at T41487 monosaccharide transporter - 2e-7 At4g21480 carbohydrate transmembrane transporter/ sugar:hydrogen symporter C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig9662_at Contig9662 - - 4e-15 At5g26340 MSS1 C.G. S.X.
0.05 6e-3 44 Oryza sativa Os07g0206600 AK119911.1 - Hexose transporter 1e-2 At5g26250 sugar transporter, putative C.G. S.X.
0.08 3e-4 48 Populus trichocarpa Ptp.5718.1.S1_at AJ698937.1 hypothetical protein - 2e-4 At3g05960 STP6 (SUGAR TRANSPORTER 6) C.G. S.X.
0.04 2e-1 38 Triticum aestivum TaAffx.110363.1.S1_at CD883484 - - 3e-19 At5g26340 MSS1 C.G. S.X.
0.02 1e-3 44 Vitis vinifera 1616083_at CB009608 hypothetical protein LOC100263644 - 6e-39 At1g11260 STP1 (SUGAR TRANSPORTER 1) C.G. S.X.
0.04 2e-2 40 Zea mays ZmAffx.7.1.S1_at AY683004.1 monosaccharide transport protein 1 - 4e-9 At1g50310 STP9 (SUGAR TRANSPORTER 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0034219 The process whereby a carbohydrate is transported from one side of a membrane to the other.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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