Gene omics information

Query gene ID At3g05950
Gene name germin-like protein, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7184.2At3g05950819765germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBOS.X.H.G.
0.9296.0At5g37450833722leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.9095.1At4g08620826426SULTR1High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane.S.X.H.G.
0.8994.6At1g70880843425Bet v I allergen family proteinF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PS.X.H.G.
0.8190.4At5g04730830351unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.7888.6At1g08090837327ATNRT2:1 (NITRATE TRANSPORTER 2:1)High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake.S.X.H.G.
0.7687.4At1g33840840280unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFS.X.H.G.
0.7687.4At1g49860841409ATGSTF14Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.6781.6At1g26250839166proline-rich extensin, putativeF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVAS.X.H.G.
0.6176.7At5g52350835311ATEXO70A3 (exocyst subunit EXO70 family protein A3)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
292.3100.0GSM142728CH001_ATH1_A007-Hampt-c4bGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
236.6100.0E-MEXP-828-raw-cel-1156922905
168.3100.0GSM142725CH001_ATH1_A004-Hampt-c1aGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
167.0100.0E-MEXP-828-raw-cel-1156922368
166.4100.0E-MEXP-828-raw-cel-1156922553
163.399.9GSM142654MC002_ATH1_A11.2-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
150.199.9GSM142653MC002_ATH1_A11.1-dubos-mxhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
146.999.9GSM157315Hammond_3-5_Potassium-starved-root_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
146.099.9GSM142733CH001_ATH1_A012-Hampt-c1cGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
142.699.9GSM142732CH001_ATH1_A011-Hampt-c4cGSE6161Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.609e-42171At3g04200819575germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOC.G.S.X.
0.223e-26119At5g39150833908germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBC.G.S.X.
0.223e-26119At5g39180833912germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBC.G.S.X.
0.227e-24111At5g39120833905germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBC.G.S.X.
0.251e-1687At5g39110833904germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOC.G.S.X.
0.266e-1581At5g39100833903GLP6 (GERMIN-LIKE PROTEIN 6)germin-like protein (GLP6)C.G.S.X.
0.123e-1479At3g04170819572germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBOC.G.S.X.
0.214e-1375At3g04180819573germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBAC.G.S.X.
0.152e-1273At3g04190819574germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.111e-138Glycine maxGma.15683.1.S1_atAW395046--5e-2At3g05950germin-like protein, putativeC.G.S.X.
0.114e-857Hordeum vulgareContig3152_atContig3152--2e-5At5g39110germin-like protein, putativeC.G.S.X.
0.127e-446Oryza sativaOs12g0154700AK063013.1-Germin family protein5e-4At3g05950germin-like protein, putativeC.G.S.X.
0.128e-342Populus trichocarpaPtpAffx.211040.1.S1_s_atpmrna21690hypothetical protein-4e-3At5g38930germin-like protein, putativeC.G.S.X.
0.084e-446Triticum aestivumTa.20563.1.S1_x_atCD870987--5e-4At3g05950germin-like protein, putativeC.G.S.X.
0.022e+032Vitis vinifera1613120_atCF404918hypothetical LOC100248029-5e-3At1g18810phytochrome kinase substrate-relatedC.G.S.X.
0.069e-340Zea maysZm.1315.1.A1_atBM348474--2e-3At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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