CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g05890

Gene name RCI2B (RARE-COLD-INDUCIBLE 2B)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At3g05890 819758 RCI2B (RARE-COLD-INDUCIBLE 2B) F:unknown;P:response to cold;C:integral to membrane;BFPMO S.X. H.G.
0.86 93.1 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.67 81.6 At3g49840 824146 unknown protein F:unknown;P:unknown;C:endomembrane system;PBM S.X. H.G.
0.67 81.6 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.60 75.7 At5g53250 835406 AGP22 (ARABINOGALACTAN PROTEIN 22) F:unknown;P:unknown;C:anchored to membrane;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
73.7 99.9 GSM226536 L6SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
43.5 99.8 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
41.5 99.8 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
40.8 99.8 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.7 99.8 GSM184518 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
38.3 99.8 GSM226539 L9SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
36.6 99.7 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
26.2 99.7 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
23.4 99.6 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
22.4 99.6 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 2e-27 121 At3g05880 819757 RCI2A (RARE-COLD-INDUCIBLE 2A) Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains. C.G. S.X.
0.06 7e-2 36 At4g01150 828181 unknown protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBO C.G. S.X.
0.02 3e-1 34 At2g39570 818542 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:unknown;POB C.G. S.X.
0.02 3e-1 34 At1g03290 838603 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.00 1e+0 32 At5g40450 834043 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAV C.G. S.X.
0.02 1e+0 32 At4g12400 826849 stress-inducible protein, putative F:binding;P:response to high light intensity, response to hydrogen peroxide, response to heat, response to stress;C:cellular_component unknown;OBMPFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-7 56 Glycine max Gma.6299.1.S1_at BQ080139 - - 3e-7 At3g05890 RCI2B (RARE-COLD-INDUCIBLE 2B) C.G. S.X.
0.05 1e-1 34 Hordeum vulgare Contig6046_s_at Contig6046 - - 2e-1 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.08 9e-3 40 Oryza sativa Os03g0370600 CA766241 - Clt1 2e-2 At3g05890 RCI2B (RARE-COLD-INDUCIBLE 2B) C.G. S.X.
0.19 3e-5 48 Populus trichocarpa PtpAffx.4286.8.S1_at CA823427 - - 1e-11 At3g05880 RCI2A (RARE-COLD-INDUCIBLE 2A) C.G. S.X.
0.14 5e-3 40 Triticum aestivum TaAffx.30470.1.S1_at CA625000 - - 1e-2 At3g05890 RCI2B (RARE-COLD-INDUCIBLE 2B) C.G. S.X.
0.15 2e-2 36 Vitis vinifera 1614672_at CF204524.1 - - 3e-1 At4g18335 unknown protein C.G. S.X.
0.12 5e-4 42 Zea mays Zm.17762.1.S1_at CK369807 hydrophobic protein LTI6B - 4e-3 At3g05890 RCI2B (RARE-COLD-INDUCIBLE 2B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009409 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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