Gene omics information

Query gene ID At3g05890
Gene name RCI2B (RARE-COLD-INDUCIBLE 2B)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2930.3At3g05890819758RCI2B (RARE-COLD-INDUCIBLE 2B)F:unknown;P:response to cold;C:integral to membrane;BFPMOS.X.H.G.
0.8693.1At5g46890834734protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.6781.6At3g49840824146unknown proteinF:unknown;P:unknown;C:endomembrane system;PBMS.X.H.G.
0.6781.6At4g12510826863protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PS.X.H.G.
0.6075.7At5g53250835406AGP22 (ARABINOGALACTAN PROTEIN 22)F:unknown;P:unknown;C:anchored to membrane;PS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
73.799.9GSM226536L6SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
43.599.8GSM184517Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
41.599.8GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
40.899.8GSM184480Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
39.799.8GSM184518Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
38.399.8GSM226539L9SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
36.699.7GSM226538L8SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
26.299.7GSM226549Slice7JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
23.499.6GSM184516Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
22.499.6GSM184481Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.612e-27121At3g05880819757RCI2A (RARE-COLD-INDUCIBLE 2A)Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains.C.G.S.X.
0.067e-236At4g01150828181unknown proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;PBOC.G.S.X.
0.023e-134At2g39570818542ACT domain-containing proteinF:amino acid binding;P:metabolic process;C:unknown;POBC.G.S.X.
0.023e-134At1g03290838603unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.001e+032At5g40450834043unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;MOBFPAVC.G.S.X.
0.021e+032At4g12400826849stress-inducible protein, putativeF:binding;P:response to high light intensity, response to hydrogen peroxide, response to heat, response to stress;C:cellular_component unknown;OBMPFAVC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.171e-756Glycine maxGma.6299.1.S1_atBQ080139--3e-7At3g05890RCI2B (RARE-COLD-INDUCIBLE 2B)C.G.S.X.
0.051e-134Hordeum vulgareContig6046_s_atContig6046--2e-1At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)C.G.S.X.
0.089e-340Oryza sativaOs03g0370600CA766241-Clt12e-2At3g05890RCI2B (RARE-COLD-INDUCIBLE 2B)C.G.S.X.
0.193e-548Populus trichocarpaPtpAffx.4286.8.S1_atCA823427--1e-11At3g05880RCI2A (RARE-COLD-INDUCIBLE 2A)C.G.S.X.
0.145e-340Triticum aestivumTaAffx.30470.1.S1_atCA625000--1e-2At3g05890RCI2B (RARE-COLD-INDUCIBLE 2B)C.G.S.X.
0.152e-236Vitis vinifera1614672_atCF204524.1--3e-1At4g18335unknown proteinC.G.S.X.
0.125e-442Zea maysZm.17762.1.S1_atCK369807hydrophobic protein LTI6B-4e-3At3g05890RCI2B (RARE-COLD-INDUCIBLE 2B)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage