Gene omics information

Query gene ID At3g05680
Gene name EMB2016 (embryo defective 2016)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At3g05680819736EMB2016 (embryo defective 2016)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MOFPBVS.X.H.G.
0.2217.5At1g64570842765-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.146.8At1g76320843965FRS4 (FAR1-related sequence 4)F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFMS.X.H.G.
0.071.9At1g64050842709unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPS.X.H.G.
0.030.6At2g38410818422VHS domain-containing protein / GAT domain-containing proteinF:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MOFPBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
161.899.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
142.199.9GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
129.099.9GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
117.699.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
104.199.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
96.499.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
74.599.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
70.399.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
65.999.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
64.499.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-140At2g35140818080-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOC.G.S.X.
0.018e-138At5g48130834865phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:chloroplast;PC.G.S.X.
0.008e-138At4g19220827662pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBC.G.S.X.
0.018e-138At3g46190823764meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFC.G.S.X.
0.008e-138At3g24880822086DNA bindingF:DNA binding;P:unknown;C:unknown;MOFPBVAC.G.S.X.
0.008e-138At3g24870822085DNA bindingF:DNA binding;P:unknown;C:apoplast;MOFPBVAC.G.S.X.
0.018e-138At3g46610823814pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.018e-138At1g23790838990unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFBOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-967Glycine maxGmaAffx.77408.1.S1_atCA784085--2e-10At3g05680EMB2016 (embryo defective 2016)C.G.S.X.
0.014e-138Hordeum vulgareContig4476_atContig4476--7e-26At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinC.G.S.X.
0.012e+038Oryza sativaOs03g0823100AK103844.1-Sugar transporter-like protein8e-26At5g59250sugar transporter family proteinC.G.S.X.
0.076e-33145Populus trichocarpaPtpAffx.213396.1.S1_atpmrna26208hypothetical protein-2e-33At3g05680EMB2016 (embryo defective 2016)C.G.S.X.
0.018e-138Triticum aestivumTa.1275.3.S1_a_atCA611468--4e+0At4g13830J20 (DNAJ-LIKE 20)C.G.S.X.
0.034e-654Vitis vinifera1617625_atCB006850hypothetical LOC100246722-2e-6At3g05680EMB2016 (embryo defective 2016)C.G.S.X.
0.011e+036Zea maysZm.2514.1.A1_atCO524312hypothetical protein LOC100273294-1e-8At4g21450vesicle-associated membrane family protein / VAMP family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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