Gene omics information

Query gene ID At3g05630
Gene name PLDP2
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6478.9At3g05630819730PLDP2Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning.S.X.H.G.
0.8894.0At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVS.X.H.G.
0.8290.9At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAS.X.H.G.
0.8089.8At2g11810815657MGDCMGD3 is the major enzyme for galactolipid metabolism during phosphate starvation. Does not contribute to galactolipid synthesis under P1-sufficient conditions.S.X.H.G.
0.8089.8At2g45130819120SPX3 (SPX DOMAIN GENE 3)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPOS.X.H.G.
0.8089.8At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7788.0At1g73010843632phosphataseF:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBFS.X.H.G.
0.7687.4At1g17710838347phosphataseF:phosphatase activity;P:metabolic process;C:unknown;MPOBFS.X.H.G.
0.6176.7At3g44520---S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
286.0100.0GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
153.299.9GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
123.399.9E-MEXP-1797-raw-cel-1669768057
119.799.9E-ATMX-31-raw-cel-1516947916
114.099.9GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
111.999.9E-MEXP-1797-raw-cel-1669768030
98.499.9E-MEXP-1797-raw-cel-1669767940
97.999.9E-MEXP-1797-raw-cel-1669768039
89.099.9E-MEXP-1797-raw-cel-1669767976
87.099.9E-MEXP-1797-raw-cel-1669767949
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.082e-965At3g16785820932PLDP1 (PHOSPHOLIPASE D P1)Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation.C.G.S.X.
0.014e-138At4g16920827400disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFVAC.G.S.X.
0.014e-138At2g39210818506nodulin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMAC.G.S.X.
0.014e-138At2g35700818139ERF38 (ERF FAMILY PROTEIN 38)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.C.G.S.X.
0.012e+036At5g01600831720ATFER1Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.C.G.S.X.
0.012e+036At5g52270835303vesicle transport protein-relatedF:molecular_function unknown;P:transport, vesicle-mediated transport;C:integral to membrane;MFPOC.G.S.X.
0.012e+036At4g32650829400ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1)A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1.C.G.S.X.
0.012e+036At4g00895827987ATP synthase delta chain-relatedF:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, catalytic core F(1), chloroplast;PFMOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.019e-344Glycine maxGmaAffx.80120.2.S1_atCA936960--4e-3At2g35700ERF38 (ERF FAMILY PROTEIN 38)C.G.S.X.
0.018e-136Hordeum vulgareContig1122_s_atContig1122--1e-22At1g07790HTB1C.G.S.X.
0.093e-656Oryza sativaOs05g03587009633.m02663-Phospholipase D/Transphosphatidylase domaincontaining protein2e-12At3g16785PLDP1 (PHOSPHOLIPASE D P1)C.G.S.X.
0.138e-28127Populus trichocarpaPtpAffx.210873.1.S1_atpmrna21353hypothetical protein-4e-69At3g16785PLDP1 (PHOSPHOLIPASE D P1)C.G.S.X.
0.011e-140Triticum aestivumTa.8589.1.A1_atCN011816--9e-2At2g35700ERF38 (ERF FAMILY PROTEIN 38)C.G.S.X.
0.015e-136Vitis vinifera1611797_atCF208103hypothetical protein LOC100257001-3e-38At2g30060Ran-binding protein 1b (RanBP1b)C.G.S.X.
0.012e-138Zea maysZm.10410.1.S1_a_atCK144329ZIP zinc/iron transport family protein-3e-2At4g33020ZIP9C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048364The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
XGO:0006995A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen.
XGO:0016036A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate.
XGO:0019375The chemical reactions and pathways resulting in the formation of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine.
XGO:0009395The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00564Link to KEGG PATHWAYGlycerophospholipid metabolism
00565Link to KEGG PATHWAYEther lipid metabolism
01100Link to KEGG PATHWAYMetabolic pathways
04144Link to KEGG PATHWAYEndocytosis
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