CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g05610

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g05610 819727 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;OBPFMVA S.X. H.G.
0.95 97.0 At2g31500 817708 CPK24 member of Calcium Dependent Protein Kinase S.X. H.G.
0.92 96.0 At1g68110 843139 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;PMFO S.X. H.G.
0.90 95.1 At3g09530 820110 ATEXO70H3 (exocyst subunit EXO70 family protein H3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.89 94.6 At2g02720 814801 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.88 94.0 At2g26450 817185 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.87 93.5 At3g20580 821605 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.85 92.4 At3g54800 824645 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:phosphoinositide binding;P:signal transduction;C:unknown;POM S.X. H.G.
0.85 92.4 At3g17980 821323 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.85 92.4 At2g23900 816922 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
163.8 99.9 E-ATMX-35-raw-cel-1574334848
159.5 99.9 E-MEXP-1138-raw-cel-1432772970
150.0 99.9 E-ATMX-35-raw-cel-1574334880
142.1 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
139.4 99.9 E-MEXP-1138-raw-cel-1432773098
137.4 99.9 E-ATMX-35-raw-cel-1574334864
124.2 99.9 GSM154506 Arabidopsis hydrated pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
123.9 99.9 E-MEXP-1138-raw-cel-1432772522
122.1 99.9 E-MEXP-1138-raw-cel-1432773002
121.5 99.9 E-MEXP-1138-raw-cel-1432772874
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 2e-153 543 At5g27870 832850 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;BMOFPVA C.G. S.X.
0.02 4e-6 54 At3g62170 825390 VGDH2 (Vanguard 1 homolog 2) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.06 1e-3 46 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. C.G. S.X.
0.02 4e-3 44 At2g45220 819130 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOM C.G. S.X.
0.02 2e-2 42 At3g60730 825244 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 2e-2 42 At1g11580 837701 PMEPCRA (METHYLESTERASE PCR A) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plasma membrane, plant-type cell wall;PBFMO C.G. S.X.
0.01 6e-2 40 At5g51490 835223 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM C.G. S.X.
0.01 6e-2 40 At3g14310 820651 ATPME3 encodes a pectin methylesterase, targeted by a cellulose binding protein (CBP) from the parasitic nematode Heterodera schachtii during parasitism. C.G. S.X.
0.01 1e+0 36 At5g04020 830281 calmodulin binding F:calmodulin binding;P:biological_process unknown;C:plasma membrane;OMBPFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-2 42 Glycine max GmaAffx.11502.1.S1_at AW119616 - - 2e-15 At1g53840 ATPME1 C.G. S.X.
0.03 5e-4 46 Hordeum vulgare Contig13318_at Contig13318 - - 1e-2 At3g59010 pectinesterase family protein C.G. S.X.
0.03 1e-1 40 Oryza sativa Os01g0254300 NM_187890.1 - Pectinesterase (EC 3.1.1.11) (Fragment) 1e-3 At3g06830 pectinesterase family protein C.G. S.X.
0.05 4e-4 48 Populus trichocarpa PtpAffx.208468.1.S1_at pmrna16820 hypothetical protein - 6e-5 At4g15980 pectinesterase family protein C.G. S.X.
0.03 1e-6 56 Triticum aestivum Ta.1564.1.S1_at CD878081 - - 1e-1 At1g11580 PMEPCRA (METHYLESTERASE PCR A) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1615574_at CB977067 hypothetical protein LOC100245304 - 7e-9 At2g45220 pectinesterase family protein C.G. S.X.
0.03 7e-3 42 Zea mays Zm.1975.1.S1_at BF729513 pectinesterase-1 - 7e-3 At3g05610 pectinesterase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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