CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g05500

Gene name rubber elongation factor (REF) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At3g05500 819715 rubber elongation factor (REF) family protein F:unknown;P:biological_process unknown;C:vacuole;P S.X. H.G.
0.14 6.8 At5g27520 832812 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth. S.X. H.G.
0.13 5.8 At1g30620 839942 MUR4 (MURUS 4) encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans. S.X. H.G.
0.06 1.4 At2g38360 818416 PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO S.X. H.G.
0.02 0.4 At3g05580 819724 serine/threonine protein phosphatase, putative F:protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
50.7 99.8 E-MEXP-1443-raw-cel-1581869863
41.4 99.8 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
40.7 99.8 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
38.9 99.8 GSM244448 Arabidopsis wild-type_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
38.6 99.8 E-MEXP-1443-raw-cel-1581869921
37.8 99.8 E-MEXP-546-raw-cel-863289476
33.2 99.7 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
32.8 99.7 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
29.1 99.7 E-MEXP-1443-raw-cel-1581869803
29.0 99.7 E-MEXP-546-raw-cel-863289424
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-1 36 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 4e-1 36 At1g71710 843501 inositol polyphosphate 5-phosphatase, putative F:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFPOV C.G. S.X.
0.01 4e-1 36 At1g48410 841262 AGO1 (ARGONAUTE 1) Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus. C.G. S.X.
0.02 4e-1 36 At1g31500 840040 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFOPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-5 50 Glycine max Gma.726.1.S1_s_at BG839313 - - 4e-5 At3g05500 rubber elongation factor (REF) family protein C.G. S.X.
0.03 7e-1 34 Hordeum vulgare Contig13667_at Contig13667 - - 6e-6 At3g56850 AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3) C.G. S.X.
0.03 3e+0 34 Oryza sativa Os12g0420866 9640.m02207 - - 6e-2 At1g35680 50S ribosomal protein L21, chloroplast / CL21 (RPL21) C.G. S.X.
0.08 8e-3 42 Populus trichocarpa Ptp.5745.1.S1_at CV253571 hypothetical protein - 1e-2 At3g05500 rubber elongation factor (REF) family protein C.G. S.X.
0.04 6e+0 32 Triticum aestivum TaAffx.79730.1.S1_at CA705431 Flavanone 3-dioxygenase - 2e-15 At3g51240 F3H (FLAVANONE 3-HYDROXYLASE) C.G. S.X.
0.08 1e-1 36 Vitis vinifera 1617736_a_at CF209766 hypothetical protein LOC100240929 - 6e-1 At3g05500 rubber elongation factor (REF) family protein C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.915.1.S1_at AI770972 - - 8e+0 Atmg01050 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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