CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g05280

Gene name integral membrane Yip1 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g05280 819692 integral membrane Yip1 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.77 88.0 At1g14670 838029 endomembrane protein 70, putative F:unknown;P:transport;C:integral to membrane, Golgi apparatus, membrane;MPOF S.X. H.G.
0.67 81.6 At5g36290 833627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFA S.X. H.G.
0.61 76.7 At4g12650 826878 - F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, vacuole;MPOF S.X. H.G.
0.60 75.7 At5g35160 833470 - F:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOF S.X. H.G.
0.48 62.5 At5g18520 831970 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB S.X. H.G.
0.34 39.8 At3g56110 824777 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO S.X. H.G.
0.31 33.8 At1g61790 842476 OST3/OST6 family protein F:oligosaccharide transmembrane transporter activity;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane, chloroplast;MFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.3 99.3 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.1 99.1 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
7.4 98.8 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
7.2 98.8 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
6.4 98.6 GSM133947 Murray_2-3_T4-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
6.2 98.6 GSM265428 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
6.0 98.5 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
6.0 98.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
5.9 98.5 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
5.9 98.5 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.81 0 704 At5g27490 832808 integral membrane Yip1 family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP C.G. S.X.
0.01 1e-1 38 At3g11440 820317 MYB65 (MYB DOMAIN PROTEIN 65) Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. The male sterile phenotype of the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures. C.G. S.X.
0.01 4e-1 36 At5g04130 830291 DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change, DNA metabolic process;C:mitochondrion;BOFMAVP C.G. S.X.
0.01 4e-1 36 At5g20610 832183 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPBFAV C.G. S.X.
0.01 4e-1 36 At3g19020 821435 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBOPFVA C.G. S.X.
0.00 4e-1 36 At1g67120 843032 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / transcription factor binding F:nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding;P:regulation of transcription, DNA-dependent, regulation of protein complex assembly;C:chloroplast envelope;OMBFPVA C.G. S.X.
0.01 2e+0 34 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. C.G. S.X.
0.01 2e+0 34 At5g15280 831380 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 3e-18 93 Glycine max Gma.739.1.S1_at BG882670 - - 6e-15 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.24 4e-15 81 Hordeum vulgare Contig9005_at Contig9005 - - 1e-14 At3g05280 integral membrane Yip1 family protein C.G. S.X.
0.12 1e-14 81 Oryza sativa Os01g0610500 AK105469.1 - Conserved hypothetical protein 1e-14 At3g05280 integral membrane Yip1 family protein C.G. S.X.
0.42 1e-54 214 Populus trichocarpa PtpAffx.675.5.S1_at CF227425 hypothetical protein - 4e-45 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.04 4e-1 36 Triticum aestivum Ta.7590.2.S1_a_at CK215141 - - 9e-8 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.23 4e-23 107 Vitis vinifera 1622567_at CF516028 hypothetical protein LOC100266603 - 2e-20 At5g27490 integral membrane Yip1 family protein C.G. S.X.
0.23 2e-16 85 Zea mays Zm.3919.1.S1_at BG840867 hypothetical protein LOC100194180 - 7e-16 At3g05280 integral membrane Yip1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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