Gene omics information

Query gene ID At3g05260
Gene name short-chain dehydrogenase/reductase (SDR) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.8894.0At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAS.X.H.G.
0.8793.5At3g12960820482unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At4g09600826545GASA3 (GAST1 PROTEIN HOMOLOG 3)One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato.S.X.H.G.
0.8391.4At3g50980824262XERO1 (DEHYDRIN XERO 1)F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMS.X.H.G.
0.8391.4At5g55750835669hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAS.X.H.G.
0.8391.4At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8290.9At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOS.X.H.G.
0.8290.9At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.S.X.H.G.
0.8190.4At4g09610826546GASA2 (GAST1 PROTEIN HOMOLOG 2)F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
450.0100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
442.9100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
395.0100.0GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
392.9100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
385.3100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
375.3100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
368.6100.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
367.2100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
321.1100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
310.6100.0GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seeds
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.241e-1377At1g54870841926binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAVC.G.S.X.
0.021e-138At3g05200819684ATL6Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).C.G.S.X.
0.021e-138At2g18300816346basic helix-loop-helix (bHLH) family proteinF:transcription factor activity;P:response to cytokinin stimulus, regulation of transcription;C:nucleus;PMFOC.G.S.X.
0.011e-138At1g33410840234SAR1 (suppressor of auxin resistance1)F:unknown;P:response to auxin stimulus, mRNA export from nucleus, developmental process;C:nuclear membrane;MPFOC.G.S.X.
0.014e-136At1g04920839382ATSPS3F (sucrose phosphate synthase 3F)Encodes a protein with putative sucrose-phosphate synthase activity.C.G.S.X.
0.012e+034At5g52320835308CYP96A4member of CYP96AC.G.S.X.
0.012e+034At5g06110830498DNAJ heat shock N-terminal domain-containing protein / cell division protein-relatedF:heat shock protein binding, DNA binding;P:protein folding;C:unknown;MOBFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.144e-859Glycine maxGma.939.1.A1_atBE823645--2e-8At3g05260short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.033e+032Hordeum vulgareHV11K06u_atHV11K06u--2e+0At3g05260short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.038e-136Oryza sativaOsAffx.22080.1.S1_at---0C.G.S.X.
0.122e-344Populus trichocarpaPtp.3940.1.S1_atDN488770hypothetical protein-2e-10At1g54870binding / catalytic/ oxidoreductaseC.G.S.X.
0.037e+032Triticum aestivumTaAffx.83103.1.S1_s_atCA662020--2e-1At5g13500unknown proteinC.G.S.X.
0.038e+030Vitis vinifera1619899_atCF403654--1e+0At1g65740F-box family proteinC.G.S.X.
0.033e+032Zea maysZm.11941.1.A1_atBM382014--5e-2At3g13403-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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